Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_013955.1 Length=15764 Score E Sequences producing significant alignments: (Bits) Value seq28589 98.7 1e-16 seq40018 86.0 6e-13 seq57646 84.2 2e-12 >seq28589 Length=6593 Score = 98.7 bits (108), Expect = 1e-16 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 11689 AAGTTAGGTTTAATAATCAACGAGGATGAAACAATGGTGTCAGCCGATTTCTTGAGTTAT 11748 || |||||| | ||||||||| |||||||| ||| || || |||||| |||||||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 11749 GGGAAGACGCCTATTTTTAGAGGAGTCATCAAGGGATTGGACCCAAAGAGATGGTCCAGA 11808 ||||| ||| | ||| ||||| ||| | |||||| || | || |||||||| || Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277 Query 11809 GTCAACTGTACAACGAATGACCAATTACCCAGCATTGGCAACACATTGGCAACTGTGAGC 11868 |||| || | ||||| ||| | ||| | | || || | ||| | ||||| Sbjct 2278 GTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCT 2337 Query 11869 ACCAATGCTTTGACTGTATCTCACTTCTCAAACTCACCATTGAATGCAATGAGATTGCAC 11928 | ||||| ||||| || || |||| ||| | ||||||||| | | | | || Sbjct 2338 TCAAATGCCTTGACAGTCTCACACTACTCGGAAAGCCCATTGAATTCTCTTATACACTAC 2397 Query 11929 AACTTATTCGGGAA 11942 ||||| || ||||| Sbjct 2398 AACTTCTTGGGGAA 2411 >seq40018 Length=56561 Score = 86.0 bits (94), Expect = 6e-13 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 11332 ACACATGAATTCTTTGAGAAAAGCTTGATCTATTATGCCAATAGACCAGATTTGATGATG 11391 ||||| |||||||||||||| || ||||| || |||||| ||| ||| ||| |||||| | Sbjct 43822 ACACACGAATTCTTTGAGAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGATGAGG 43881 Query 11392 GTTCAAGGAGATTCTCTCATTAATAGAACAGAGCATATGGTATGCTGGGAAGGTCAAAAA 11451 || ||| ||| || | || ||| || |||| |||||| | || ||| | Sbjct 43882 GTAGAAGATGATATGCTATTCAACTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGA 43941 Query 11452 GGAGGATTAGAAGGCCTTAGACAAAAGGGATGGTC 11486 || || || ||||| || ||| |||| || ||||| Sbjct 43942 GGGGGTTTGGAAGGGCTAAGATAAAAAGGTTGGTC 43976 >seq57646 Length=1202957 Score = 84.2 bits (92), Expect = 2e-12 Identities = 160/235 (68%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 10915 CTTAATAGAGAAGCAACAAACTGGGCTGAATTCCTCCAAAGAATAAATGACGAAGGTTTG 10974 ||| | | |||||| ||||| ||| ||||||||| | | |||||||| || || Sbjct 1171195 CTTCAAACAGAAGCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATT- 1171137 Query 10975 CCCAGGGATTG----TCTCGCTATTGGACTCAAAGCAAAAGAAAGAGAAGTAAAGTTAGT 11030 || | | | | | | ||| || || | || |||||||||||| |||| | | Sbjct 1171136 ---AGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATT 1171080 Query 11031 TGGAAGGtttttttCTTTAATGACATGGGAACTCAGAGAATATTTCGTATGTACAGAGTA 11090 || || || || ||| | ||||||||| ||||||| || || || ||| |||||||| Sbjct 1171079 AGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTA 1171020 Query 11091 TATGATCAAACAGTTCTTCATTCCCCTGTTTCAAGGCCTGACTATGGCTGATGAT 11145 | | || ||| || ||||| || ||| ||| | |||||||| |||||| Sbjct 1171019 TCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGAT 1170965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50291457546949