Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq57646 150 2e-32 >seq57646 Length=1202957 Score = 150 bits (166), Expect = 2e-32 Identities = 459/697 (66%), Gaps = 22/697 (3%) Strand=Plus/Minus Query 9334 TTTCGACATTGGGGACACCCCTTTATATTGTATTTGAATGGGCTGAGAAAACTAAACAAT 9393 |||||||||||||| ||||| ||| || |||| || | || || | |||| || | | Sbjct 1171627 TTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAGGCCTTACAAAATTATATGAG 1171568 Query 9394 ATAAC--CAATCAAACAGTAGAAGTTGATAAGGAGTATGCAAGAATGCTGGCAAGTGATT 9451 ||| || | ||| || | | ||||| | || || | ||| || ||||| Sbjct 1171567 CAAACTACACTTAAAAAGAATA--TTGATTTAAATTACGCCTCACAGCTAGCTAGTGACA 1171510 Query 9452 TAGCTTTCAAAGTTCTTAAAGA--AATGTTCTTaaaa--aagaaaaaaTGGTTTGTGGAT 9507 | || |||| || | |||| ||| |||||| ||||||||||||||||| || Sbjct 1171509 TGGCATTCATTGTGTTACAAGATCAAT----TTAAAAGAAAGAAAAAATGGTTTGTCAAT 1171454 Query 9508 CATAAACAAATGGCAAAAAATCATATATTGTATCCTTTCATTAAAGGCAATACCTGGCCT 9567 | || ||| | ||||| || | ||| |||||| ||||| ||||| Sbjct 1171453 ATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCACATTAAGAATAATACATGGCCA 1171394 Query 9568 ACTCAGTCAGTTTTGGATAAATTTGGTGATCATTGGGAATCATTACCAATTGCCAAATGC 9627 ||||| || | | | | |||||||| | ||| | | |||| | | |||||| Sbjct 1171393 ACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTTATCTAAATGC 1171334 Query 9628 TTTGACATACCAGATATGATAGACCCGAGCGTGATTTATAGTGACAAAAGTCATTCCTAT 9687 ||||| ||||| ||| | ||||| || || | |||||| || |||||||| || ||| Sbjct 1171333 TTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCTTAT 1171274 Query 9688 GATAGATCAGACGTGATCAAATTTAT-TCAAAATCCCCAAACAAAGAGAATTCCAACTAA 9746 | ||||| | | | ||| | ||| || || || | | | ||| || | Sbjct 1171273 ACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCAATACACCTG-TCCCATCTCA 1171215 Query 9747 AAGGGTGTTATCAAC-CATGATATCAAG-ACCAGCCAGAAATTGGCCAGAATTTCTGAAA 9804 | ||| | ||| ||| |||| | ||||| ||||||| ||||| || || Sbjct 1171214 TAAGGTACT--CAAGACATTCCTTCAAACAGAAGCCACAAATTGGAAGGAATTCCTCAAG 1171157 Query 9805 ACAATCAATGATCATGGTTTGGATTGGGAAAAATTAGTAATAGGGTTGAAGGCTAAAGAA 9864 | || |||||| ||| || || | || | ||||| ||||| | | | |||||| Sbjct 1171156 AAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAA 1171097 Query 9865 AGAGAATTAAAAATTGAT--GGCAGATTCTTCTCATTAATGTCATATGATATGAGAGATT 9922 |||||| |||||| ||| || ||||||||||| | ||| ||| | | || |||| Sbjct 1171096 AGAGAAATAAAAA--GATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATT 1171039 Query 9923 ATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGATTAA 9982 | ||||| ||||| |||||||| || |||| ||||| ||||| |||| ||| |||| Sbjct 1171038 ACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAA 1170979 Query 9983 CAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaT 10019 | ||||| ||||| |||| | ||| | ||||| || Sbjct 1170978 CTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46943383785160