Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq57646 167 2e-37 seq40018 127 2e-25 >seq57646 Length=1202957 Score = 167 bits (184), Expect = 2e-37 Identities = 478/719 (66%), Gaps = 12/719 (2%) Strand=Plus/Minus Query 10483 GATTTAATATTAACAATTTATGGATCATTTCGCCATTGGGGTCACCCTTTTATAAATTAT 10542 ||||| ||||| | | |||||||||||||| |||||||||||||| ||| || | ||| Sbjct 1171654 GATTTGGTATTAGTAGTGTATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTAT 1171595 Query 10543 TTGGAAGGTTTGGAAAAATTAGAA-AGTCAAGTGAATGCCAATTTAGATGTTGATAGAGA 10601 || |||| | ||||||| | || || | | || | || ||||| | | Sbjct 1171594 ATGCAAGGCCTTACAAAATTATATGAGCAAACTACACTTAAAAAGA-ATATTGATTTAAA 1171536 Query 10602 TTACTG-TGAAAGATTGGCAAGTGATTTAGCCTATAAAGTATTA-AAGAAAATGTTCTTT 10659 |||| | | || | | | ||||| | || | | || ||| |||| | || Sbjct 1171535 TTACGCCTCACAGCTAG-CTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAA 1171477 Query 10660 GAGAAGAAAAAATGGTTTGTAGATAAAAAATTAATGGATAAGAGATC-TAAAATGTACGA 10718 || ||||||||||||||||| ||| | || |||||||| | | | || || Sbjct 1171476 GA-AAGAAAAAATGGTTTGTCAATATCGCAGGTATTCC-AAGAGATCATGTACTCTATGA 1171419 Query 10719 ACATGTAATGCAAAACACCTGGCCAACACAGGGAGTTATCGATGATTTTGGAGACAACTG 10778 || | | | | || || |||||||| || || | ||||||||| ||| || Sbjct 1171418 CCACATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATG 1171359 Query 10779 GCATAGACTGCCATTGATTAAATGTTTTGATATTCCTGATATGATTGACCCCAGTATAAT 10838 |||| ||| || || |||||| ||||| || || ||| | || || || ||| |||| Sbjct 1171358 GCATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAAT 1171299 Query 10839 ATACAGTGATAAATCTCATTCTATTAATAGATCAGAAGTAATGAAACATATTCGAGAAAA 10898 || |||||| ||| ||| || | |||||| ||| | | ||||| | | Sbjct 1171298 TTATTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTC 1171239 Query 10899 ACCAAACAAACCTATACCAACA-AGAAGAGTACTGAAAACATTATTAGAGAAACCTGCGA 10957 || || | |||| | ||| | | ||| ||||| || ||||| | | | | || | Sbjct 1171238 TCCCAATACACCTGTCCCATCTCATAAG-GTACTCAAGACATTCCTTCAAACAGAAGCCA 1171180 Query 10958 CAATTTGGCCTGAATTTCTTAAAAAAGTCAATGATTTTGGATTGGATTGGGAGAGTTTGG 11017 ||| |||| ||||| || || || | |||||||||||||| || | ||| ||| | Sbjct 1171179 CAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAG 1171120 Query 11018 TAATTGGGTTAAAAGCAAAGGAAAGGGAATTGAAG-GATGCAGGTAGATTCTTTTCATTG 11076 | || || ||| || || ||||| ||| | || ||| |||||||||||| || || Sbjct 1171119 TTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATT-AGGTAGATTCTTCTCTCTG 1171061 Query 11077 ATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTATTTGATTAAAGAACATTTT 11136 |||| ||| | | || || || |||||| | ||||||||| | |||||| || | | Sbjct 1171060 ATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTAT 1171001 Query 11137 GTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACAAACTGTAATTAAAAAGAT 11195 | ||| |||| ||| ||||||||||| |||||| || | | || || |||||||| Sbjct 1171000 ATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 127 bits (140), Expect = 2e-25 Identities = 295/435 (68%), Gaps = 20/435 (5%) Strand=Plus/Plus Query 11089 TTAAGAGAGTATTTTGTATTCACAGAGTATTTGATTAAAGAACATTTTGTGCCATTATTC 11148 |||||||| ||||||||| |||| ||||| |||||||| ||| | ||| | | || Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 11149 AAAGGATTAACTATGGCAGATGATCTA--CAAACTGTAATTAAAAAGATGATTGATGTA- 11205 ||||| | |||||||||||||||||| || |||| | | |||||||| ||| || Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTG--ACAACAAAGATGA-TGAACTAC 43664 Query 11206 TCAGCAGGACAAGGTACTGAA-ACCTATGAAAA---CA-TAACAATAGCGAATAATATTG 11260 || | |||| ||| || || | ||||| | || || ||||| ||| || | Sbjct 43665 ACAACGGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAG 43723 Query 11261 ACTATGAGAAGTGGAATAATTATCAAAGATATGATTCAAATAGTGCAATTTTCACTGTCA 11320 |||| ||||| ||||| ||| ||||||| | || || ||| || ||| ||| | Sbjct 43724 ACTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAA 43783 Query 11321 TGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAGAACTCATGAGTTTTTTGAGAAAA 11380 || | || || |||| ||| || ||||| | || || || || || |||||||| | Sbjct 43784 TGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGA 43843 Query 11381 GCCTGATCTACTATAATCAGAGACCAGATCTGATGAGAGTTGTTGGAAATGAGGTAGTGA 11440 | |||| |||||| | | ||| ||||||||||| || | | || | || | | Sbjct 43844 GTTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCA 43903 Query 11441 GCATGGACAACAAAAAAGTTGCT----TGGGAGGGACAAAAGGGGGGATTAGAAGGTCTG 11496 | |||| | | |||| | ||| | |||||| ||||| || ||||| || Sbjct 43904 AC----TCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTA 43959 Query 11497 AGACAAAAAGGGTGG 11511 ||| ||||||| ||| Sbjct 43960 AGATAAAAAGGTTGG 43974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50620828700210