Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_020804.1 Length=13298 Score E Sequences producing significant alignments: (Bits) Value seq57646 98.7 8e-17 >seq57646 Length=1202957 Score = 98.7 bits (108), Expect = 8e-17 Identities = 373/571 (65%), Gaps = 22/571 (4%) Strand=Plus/Minus Query 7979 TAGCCAGTGATCTTGCATTTAAAGTTTTA-AAGAAAAAGTTTAGAGAAGATAAAAAATGG 8037 |||| ||||| | ||||| | || ||| |||| || || | |||| | ||||||||| Sbjct 1171521 TAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAA-AGAAAAAATGG 1171463 Query 8038 TATGTTGATCACaaaaaaaTGGATC--AGA-ATAATTTACTCTACACTCATATTAAAAAT 8094 | ||| || | | || || ||| || || ||||||| || ||||| ||| Sbjct 1171462 TTTGTCAATATCGCAGGTAT---TCCAAGAGATCATGTACTCTATGACCACATTAAGAAT 1171406 Query 8095 AACACATGGCCTAATC---CTCAAACTAGAATTCAATTTGGAGATAACTGGCACAAACTG 8151 || |||||||| | || |||||| ||| || | ||||| || ||||| |||| Sbjct 1171405 AATACATGGCCAACTCATTCTCAAA-TAG--TTGATTTTGGTGACCGATGGCATGAACTA 1171349 Query 8152 CCATTGATTAAATGTTTCGAATTGCCAGACATGATTGATTTATCATCAATTTATTCAGAC 8211 || || |||||| || || | || || | || ||| | |||||||||||| Sbjct 1171348 CCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGAT 1171289 Query 8212 AA--GTCACATAGCTTA-ACAAGATCACAAGTAGTAGAACATGTAAGATATAATTCAGAT 8268 || ||||| |||| || ||| || || || ||| | | | | | || Sbjct 1171288 AAAAGTCACT---CTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCAAT 1171232 Query 8269 AAGCCTATCCCGACTAAAAGGGTTCTTAACACTCTCTTGGAAACAGAAAATGTCAATTGG 8328 | ||| |||| || | | ||| || || || || | |||||||| |||||| Sbjct 1171231 ACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTGG 1171172 Query 8329 CCTGAATTTCTTAAATCAGTCAATGATTTTGGCCTACCTCCAGAAGATCTTGTTATAGGA 8388 ||||| || || | ||||||||||| || ||| || | |||||||| Sbjct 1171171 AAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGT 1171112 Query 8389 TTAAAACCCAAAGAGAGAGAAATGAAAAGAACTGGTCGttttttttCATTGATGACATGG 8448 ||| | ||||| |||||||| |||||| ||| | || || || ||||||||||| Sbjct 1171111 CTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGG 1171052 Query 8449 -AACTTACGGAATTATTTTGTCATGACTGAGTTATTAATTAAAGAACACTTCATAGGACT 8507 |||| | || |||| ||||| || || |||| | |||||| |||| || ||| Sbjct 1171051 CAACTCA-GGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACT 1170993 Query 8508 ATTCAACGGTTTAACCATGGCTGATGACTTA 8538 ||| || ||||| ||||| ||||| ||| Sbjct 1170992 ATTTTCAGGGTTAACTATGGCCGATGATTTA 1170962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42405736537807