Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_020805.1
Length=11120
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 159 2e-35
seq28589 125 5e-25
seq57646 107 1e-19
>seq40018
Length=56561
Score = 159 bits (176), Expect = 2e-35
Identities = 531/819 (65%), Gaps = 38/819 (5%)
Strand=Plus/Plus
Query 5994 CCTTTAAAAACCACATCCGAGACAACACATGGCCAACAGCTGCAGTGATCCAAGATTTTG 6053
||| || |||| | || ||||| |||| |||||||| | | |||| ||| || |
Sbjct 43178 CCTATATAAAC-ATATACGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCG 43236
Query 6054 GAGATCACTGGCATGAGCTCCCATTAATTCAATGCTTCGACATACCTGATCTGATTGATC 6113
| || | ||||| |||||| | | | || ||||| ||||||||| |||| |||
Sbjct 43237 GGGACAAGTGGCACATGCTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATG 43296
Query 6114 CATCCATTATCTACT---CAGACAAGAGCCATTCCATGAATCG----ATCAGAGGTGTTA 6166
|||||| ||| | | | || |||| || ||||||||||| | || | ||
Sbjct 43297 CATCCACTATATTATATGCGGATAAGAATCACTCCATGAATCGTAGTACCATA----TTG 43352
Query 6167 AATCATGTAAGAACCAAGCCTCATACACCGATTCCAAGCAAGAAAGTTTTAGAGAGTATG 6226
|| |||||||| || | || || | | ||| ||||||| | |
Sbjct 43353 GATTTGGTAAGAACAAAAAAGAAAGGTCCAATAACGTCTTAAAAACTTTTAGATACATTC 43412
Query 6227 ATCGACAAACCAGCGACAAATTGGCTTGAGTTTCTTGAAGAGATCGACAAAAATGGATTA 6286
||| | | | || |||||| |||| | ||||| || || | |||||||||
Sbjct 43413 ATCACTAGTCGTGTTACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAATGGATTA 43472
Query 6287 TCTGATGAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAA---GATTGCA 6343
|| ||||| | |||||| |||| || || ||||||||||| | || ||||
Sbjct 43473 TCACTAGAGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAAGGATT--- 43529
Query 6344 GGTAGATTTTTCTCATTGATGTCTTGGAAGCTT-AGGGAATACTTTGTTGTCACAGAGTA 6402
||| |||||||| | |||||| || ||||| ||||| |||| |||||
Sbjct 43530 GGTCGATTTTTCAC-------------AAGCTTAAGAGAATATTTTGTAATCACCGAGTA 43576
Query 6403 TTTGATCAAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGAC 6462
|||| || || |||| ||| | |||| | || || || ||||| |||||| | ||
Sbjct 43577 CCTGATTAAAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAAC 43636
Query 6463 AGCAGTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGA-CA 6521
|| ||| | ||||||| || | | | | || || | |||| || || || ||
Sbjct 43637 CACACTGACAACAAAGATGATGAACTACACAACGGGACAGGATCTAAATAATTATGATCA 43696
Query 6522 ---GCGTTTGTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAAT 6578
|| ||| ||||||| || ||||| || |||||||| ||| ||||| | | |
Sbjct 43697 TGTCAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGAC 43756
Query 6579 TGTCCAATGGACCTGTGTTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATAT 6638
||||| | | | || || ||| | |||||||| | ||| ||||| ||
Sbjct 43757 AATCCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTG 43816
Query 6639 ACCGGACACATGAGTTTTTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGATCTCA 6698
| ||||||| || || |||||||| ||||| ||||||||| || | ||| ||||| |
Sbjct 43817 AGAGGACACACGAATTCTTTGAGAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGA 43876
Query 6699 TGAAAGTCAGAA-ATGGGATCTTAGAAAATAGCACACATCAGAGGGTTTGCTGGAATGGA 6757
||| || |||| ||| || || || || || | ||| ||||||||||||
Sbjct 43877 TGAGGGT-AGAAGATGATATGCTATTCAACTCAACTGATAGGTTGGTGTGCTGGAATGGA 43935
Query 6758 CAGGCAGGTGGTTTAGAAGGTTTGAGACAGAAAGGATGG 6796
|| ||| ||||| ||||| | ||| | ||||| |||
Sbjct 43936 CAACGAGGGGGTTTGGAAGGGCTAAGATAAAAAGGTTGG 43974
>seq28589
Length=6593
Score = 125 bits (138), Expect = 5e-25
Identities = 175/243 (72%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 7016 ATCAATCAG-GATGAGACGATGCAATCTGCTGATTATCTGAACTATGGGAAGGTACCTAT 7074
||||| ||| ||||| || |||| |||||| |||| |||| |||||||| || ||| |
Sbjct 2173 ATCAA-CAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGT 2231
Query 7075 CTTTAGAGGAGTAATCAGAGGGCTGGAAACAAAGCGATGGTCCCGAGTCACTTGTGTGAC 7134
||| ||||| || || || | || || || ||||||| ||||||||||| ||| |
Sbjct 2232 ATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTC 2291
Query 7135 AAATGACCAATTACCAACGTGTGCAAATCTCATGTCATCTGTATCTACAAATGCTTTGAC 7194
||||| ||| | || | | ||| || |||| |||||||| ||||||| |||||
Sbjct 2292 CAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAATGCCTTGAC 2351
Query 7195 AGTGGCACATTTCGATGTACACCCATTAAATGCAATGATCCAATTTAACTTCTTCGGGAA 7254
||| |||| | | | | |||||| ||| | | || || | |||||||| |||||
Sbjct 2352 AGTCTCACACTACTCGGAAAGCCCATTGAATTCTCTTATACACTACAACTTCTTGGGGAA 2411
Query 7255 TTT 7257
|||
Sbjct 2412 TTT 2414
>seq57646
Length=1202957
Score = 107 bits (118), Expect = 1e-19
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 6293 GAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACT--GAAGATTGCAGGTAGAT 6350
||| |||| || || || ||| ||| |||||||||||| | |||||| ||||||||
Sbjct 1171129 GAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATT--AGGTAGAT 1171072
Query 6351 TTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCA 6410
| ||||| ||||| | ||| | || ||||| |||||||| | ||||||||| | || |
Sbjct 1171071 TCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTA 1171012
Query 6411 AGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGA 6470
| | ||||| | | ||| | || ||| | || ||||| |||||| | | |||| |
Sbjct 1171011 AAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTA 1170952
Query 6471 TCAAAAAGAT 6480
| ||||||||
Sbjct 1170951 TGAAAAAGAT 1170942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35444839007824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |