Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq40018 159 2e-35 seq28589 125 5e-25 seq57646 107 1e-19 >seq40018 Length=56561 Score = 159 bits (176), Expect = 2e-35 Identities = 531/819 (65%), Gaps = 38/819 (5%) Strand=Plus/Plus Query 5994 CCTTTAAAAACCACATCCGAGACAACACATGGCCAACAGCTGCAGTGATCCAAGATTTTG 6053 ||| || |||| | || ||||| |||| |||||||| | | |||| ||| || | Sbjct 43178 CCTATATAAAC-ATATACGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCG 43236 Query 6054 GAGATCACTGGCATGAGCTCCCATTAATTCAATGCTTCGACATACCTGATCTGATTGATC 6113 | || | ||||| |||||| | | | || ||||| ||||||||| |||| ||| Sbjct 43237 GGGACAAGTGGCACATGCTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATG 43296 Query 6114 CATCCATTATCTACT---CAGACAAGAGCCATTCCATGAATCG----ATCAGAGGTGTTA 6166 |||||| ||| | | | || |||| || ||||||||||| | || | || Sbjct 43297 CATCCACTATATTATATGCGGATAAGAATCACTCCATGAATCGTAGTACCATA----TTG 43352 Query 6167 AATCATGTAAGAACCAAGCCTCATACACCGATTCCAAGCAAGAAAGTTTTAGAGAGTATG 6226 || |||||||| || | || || | | ||| ||||||| | | Sbjct 43353 GATTTGGTAAGAACAAAAAAGAAAGGTCCAATAACGTCTTAAAAACTTTTAGATACATTC 43412 Query 6227 ATCGACAAACCAGCGACAAATTGGCTTGAGTTTCTTGAAGAGATCGACAAAAATGGATTA 6286 ||| | | | || |||||| |||| | ||||| || || | ||||||||| Sbjct 43413 ATCACTAGTCGTGTTACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAATGGATTA 43472 Query 6287 TCTGATGAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAA---GATTGCA 6343 || ||||| | |||||| |||| || || ||||||||||| | || |||| Sbjct 43473 TCACTAGAGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAAGGATT--- 43529 Query 6344 GGTAGATTTTTCTCATTGATGTCTTGGAAGCTT-AGGGAATACTTTGTTGTCACAGAGTA 6402 ||| |||||||| | |||||| || ||||| ||||| |||| ||||| Sbjct 43530 GGTCGATTTTTCAC-------------AAGCTTAAGAGAATATTTTGTAATCACCGAGTA 43576 Query 6403 TTTGATCAAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGAC 6462 |||| || || |||| ||| | |||| | || || || ||||| |||||| | || Sbjct 43577 CCTGATTAAAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAAC 43636 Query 6463 AGCAGTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGA-CA 6521 || ||| | ||||||| || | | | | || || | |||| || || || || Sbjct 43637 CACACTGACAACAAAGATGATGAACTACACAACGGGACAGGATCTAAATAATTATGATCA 43696 Query 6522 ---GCGTTTGTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAAT 6578 || ||| ||||||| || ||||| || |||||||| ||| ||||| | | | Sbjct 43697 TGTCAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGAC 43756 Query 6579 TGTCCAATGGACCTGTGTTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATAT 6638 ||||| | | | || || ||| | |||||||| | ||| ||||| || Sbjct 43757 AATCCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTG 43816 Query 6639 ACCGGACACATGAGTTTTTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGATCTCA 6698 | ||||||| || || |||||||| ||||| ||||||||| || | ||| ||||| | Sbjct 43817 AGAGGACACACGAATTCTTTGAGAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGA 43876 Query 6699 TGAAAGTCAGAA-ATGGGATCTTAGAAAATAGCACACATCAGAGGGTTTGCTGGAATGGA 6757 ||| || |||| ||| || || || || || | ||| |||||||||||| Sbjct 43877 TGAGGGT-AGAAGATGATATGCTATTCAACTCAACTGATAGGTTGGTGTGCTGGAATGGA 43935 Query 6758 CAGGCAGGTGGTTTAGAAGGTTTGAGACAGAAAGGATGG 6796 || ||| ||||| ||||| | ||| | ||||| ||| Sbjct 43936 CAACGAGGGGGTTTGGAAGGGCTAAGATAAAAAGGTTGG 43974 >seq28589 Length=6593 Score = 125 bits (138), Expect = 5e-25 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 7016 ATCAATCAG-GATGAGACGATGCAATCTGCTGATTATCTGAACTATGGGAAGGTACCTAT 7074 ||||| ||| ||||| || |||| |||||| |||| |||| |||||||| || ||| | Sbjct 2173 ATCAA-CAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGT 2231 Query 7075 CTTTAGAGGAGTAATCAGAGGGCTGGAAACAAAGCGATGGTCCCGAGTCACTTGTGTGAC 7134 ||| ||||| || || || | || || || ||||||| ||||||||||| ||| | Sbjct 2232 ATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTC 2291 Query 7135 AAATGACCAATTACCAACGTGTGCAAATCTCATGTCATCTGTATCTACAAATGCTTTGAC 7194 ||||| ||| | || | | ||| || |||| |||||||| ||||||| ||||| Sbjct 2292 CAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAATGCCTTGAC 2351 Query 7195 AGTGGCACATTTCGATGTACACCCATTAAATGCAATGATCCAATTTAACTTCTTCGGGAA 7254 ||| |||| | | | | |||||| ||| | | || || | |||||||| ||||| Sbjct 2352 AGTCTCACACTACTCGGAAAGCCCATTGAATTCTCTTATACACTACAACTTCTTGGGGAA 2411 Query 7255 TTT 7257 ||| Sbjct 2412 TTT 2414 >seq57646 Length=1202957 Score = 107 bits (118), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 6293 GAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACT--GAAGATTGCAGGTAGAT 6350 ||| |||| || || || ||| ||| |||||||||||| | |||||| |||||||| Sbjct 1171129 GAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATT--AGGTAGAT 1171072 Query 6351 TTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCA 6410 | ||||| ||||| | ||| | || ||||| |||||||| | ||||||||| | || | Sbjct 1171071 TCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTA 1171012 Query 6411 AGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGA 6470 | | ||||| | | ||| | || ||| | || ||||| |||||| | | |||| | Sbjct 1171011 AAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTA 1170952 Query 6471 TCAAAAAGAT 6480 | |||||||| Sbjct 1170951 TGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35444839007824