Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq40018 156 3e-34 seq28589 104 2e-18 seq57646 78.8 7e-11 >seq40018 Length=56561 Score = 156 bits (172), Expect = 3e-34 Identities = 290/424 (68%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 6337 AGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACTTTGTACCACTTTTCCAC 6396 |||||||||||||| ||||| || || || ||||| ||||||| |||| | || || | Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610 Query 6397 GGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAATGTTGGAAAGTTCAAGT 6456 || | || ||||||||||| | || | | | || || ||| || | ||| Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACAACG 43670 Query 6457 GGACAGGGTCTAAAAGATTAT--TC--GGCAGTATGCATTGCAAACCACATTGACTATGA 6512 ||||||| |||||| ||||| || | ||||| || ||||| | || ||||| || Sbjct 43671 GGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGA 43730 Query 6513 GAAATGGAACAACCATCAGAGGAAACGGTCAAATGAACCAATTTTTAAAGTCATGGGTCA 6572 |||||||||||| |||| |||| || || || | || || || ||| || Sbjct 43731 GAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTGC 43790 Query 6573 ATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTCTTTGAGAAAAGTCTCAT 6632 |||||||||| ||| || | || |||||| || |||||||||||||| ||| | || Sbjct 43791 GTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGAT 43850 Query 6633 CTATTATAATGGAAGGCCTGATTTGATGAAGGTGCAAGATGGAAGACTTGTGAACACAAC 6692 || ||| | | |||||| |||||| ||| |||||| | || | ||| |||| Sbjct 43851 TTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAACTCAAC 43910 Query 6693 GAAGCAATTGGTTTGTTGGGAAGGACAGGCAGGCGGATTAGAGGGGTTAAGACAGAAGGG 6752 | ||||| || ||| | ||||| ||| || || || ||| ||||| | || || Sbjct 43911 TGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAAAGG 43970 Query 6753 ATGG 6756 ||| Sbjct 43971 TTGG 43974 >seq28589 Length=6593 Score = 104 bits (114), Expect = 2e-18 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 6961 AAACTAGGTTTGTTGATCAACCAAGATGAAACAATGCAATCAGCTGACTACCTGAATTAC 7020 ||| ||||| | | |||||| ||||||||| |||| ||| || || | ||||| ||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 7021 GGTAAAGTTCCCATATTTAGAGGAGTGATACGAGGTTTAGAAACAAAAAGGTGGTCACGA 7080 || ||||| || ||||| ||||| || | || ||||| || ||||| ||||||||| Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277 Query 7081 GTGACTTGTGTAACAAATGACCAACTTCCC 7110 || ||||| || | ||||| ||||| ||| Sbjct 2278 GTCACTTGCGTGTCCAATGATCAACTGCCC 2307 >seq57646 Length=1202957 Score = 78.8 bits (86), Expect = 7e-11 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 5977 AATACATGGCCTACTCCAGCCGTGATACAAGATTTTGGGGACAAATGGCATGAGTTACCA 6036 ||||||||||| |||| | ||| |||||||| ||| ||||||||| |||| Sbjct 1171405 AATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCG 1171346 Query 6037 CTCACTCAATGCTTTGAAATTCCTGATTTGATAGACCCTTCTATCATCTACTCGGATAAA 6096 | || |||||||||| || || ||| | ||||| ||| | | || || || |||||| Sbjct 1171345 TTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAA 1171286 Query 6097 AGTCACTC 6104 |||||||| Sbjct 1171285 AGTCACTC 1171278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35342508184272