Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_022580.1 Length=12676 Score E Sequences producing significant alignments: (Bits) Value seq57646 100 2e-17 seq40018 95.1 1e-15 >seq57646 Length=1202957 Score = 100 bits (110), Expect = 2e-17 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 7709 TTTGGTTATTGGTTTACAAGCCAAAGAAAGGGAAATCAAG-GATGAGGGTCGATTTTTCT 7767 ||| ||||| ||| || || |||||||| ||||| || ||| ||| | |||| |||| Sbjct 1171124 TTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGG-TAGATTCTTCT 1171066 Query 7768 CTTTAATGTCATGGGAATTACGGGAATATTTTGTTGTAACAGAATACTTAATTAAAGAGC 7827 || | ||| ||||| || | |||| || ||||| ||||||| || | |||||| | Sbjct 1171065 CTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTC 1171006 Query 7828 ATTTTGTTCCATTGTTCCATGGATTAACGATGGCAGATGATTTAACCACTGTGATGAAAA 7887 | | | ||||| | || || ||||| ||||| |||||||||| | || ||||||| Sbjct 1171005 ACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAA 1170946 Query 7888 AGAT 7891 |||| Sbjct 1170945 AGAT 1170942 >seq40018 Length=56561 Score = 95.1 bits (104), Expect = 1e-15 Identities = 276/428 (64%), Gaps = 9/428 (2%) Strand=Plus/Plus Query 7785 TTACGGGAATATTTTGTTGTAACAGAATACTTAATTAAAGAGCATTTTGTTCCATTGTTC 7844 ||| | ||||||||||| | || || ||| | |||||| || | ||| | |||| Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 7845 CATGGATTAACGATGGCAGATGATTTAACCACTGTGATGAAAAAGATGCTGGACAATACA 7904 | || | || |||||||||||| ||||||| ||| | ||||||| || || | ||| Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667 Query 7905 ATCGGCCAAGGTGGCAAGGACTACACACAAATTTGCA----TAGCCAATCACTTTGATTA 7960 | || || | | || | || || | | | |||| |||| | || || Sbjct 43668 ACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTA 43727 Query 7961 TGAGAAATGGAACAATCATCAGAGGAAGGAATCTANNNNNNNNNNNNNNNNNNNNATGGG 8020 ||||||||||||||| |||| |||| |||| | ||| | Sbjct 43728 GGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAG 43787 Query 8021 GCAGTTTCTCGGATATCCCTCCTTAATTGAGAGAACTCATGAATTCTTTGAAAAAAGCTG 8080 ||| | || | ||| ||||||||||| || || ||||||||||| || || | Sbjct 43788 TGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTT 43847 Query 8081 GATTTATTATAAGGACAGAGCAGAT-TGTTTAGAAGTGAAGGGTGATAGAATTT---ACT 8136 |||||| ||| || | | | ||| || | || |||| ||||| | | ||| Sbjct 43848 GATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGA-TGATATGCTATTCAACT 43906 Query 8137 CCACTGAAGGGCAATTCTGTTGGAATGGACAACTAGGAGGATTGGAAGGTCTCCGACAAA 8196 | ||||| || | || ||||||||||||| ||| || |||||||| || || ||| Sbjct 43907 CAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAA 43966 Query 8197 AAGGTTGG 8204 |||||||| Sbjct 43967 AAGGTTGG 43974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40420675303040