Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_022581.1 Length=11806 Score E Sequences producing significant alignments: (Bits) Value seq40018 111 1e-20 seq28589 102 6e-18 seq57646 84.2 2e-12 >seq40018 Length=56561 Score = 111 bits (122), Expect = 1e-20 Identities = 288/433 (67%), Gaps = 16/433 (4%) Strand=Plus/Plus Query 6876 TTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACGTCCCTCTCTTT 6935 || || || ||||||||||| || || |||||||| ||||| || || || | || || Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 6936 AAAGGATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAA-GATGTTAGAAAGAAG 6994 ||||| | || ||||||||||| | || | | ||| || |||| | || | Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACT-GACAACAAAGATGATG--AACTAC 43664 Query 6995 TCAA--GGACAAGGAGAGGATGATTACGAGCACGTCAGCA----TTGCCAACCACATTGA 7048 ||| ||||| | || |||| || || ||||| | | || || | || || Sbjct 43665 ACAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGA 43724 Query 7049 TTATGAAAAATGGAACAACCATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAGAGTCAT 7108 || || ||||||||||| ||||||||| | | || ||| | | | | ||| | || || Sbjct 43725 CTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAAT 43784 Query 7109 GGGACAATTTCTGGGGTACCCTAGTTTGATAGAAAAGACCCATGACTTCTTTGAGCAAAG 7168 | | || |||||| || | ||| || || | ||| || || ||||||||| | || Sbjct 43785 GAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAG 43844 Query 7169 CTTGATCTATTATAATGGCAGACCTGACTTGATGCAGACAGATGGAGACGAGTTGCAA-- 7226 ||||| || ||| | | |||||| ||||| | ||| ||| || ||| | Sbjct 43845 TTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGA---AGATGATATGCTATT 43901 Query 7227 -AACCGAACGGAAGCTTTGGTGTGTTGGAATGGTCAGAAAGGAGGATTAGAAGGACTCAG 7285 ||| ||| || |||||||| |||||||| || ||| || || ||||| || || Sbjct 43902 CAACTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAG 43961 Query 7286 GCAAAAAGGATGG 7298 ||||||| ||| Sbjct 43962 ATAAAAAGGTTGG 43974 >seq28589 Length=6593 Score = 102 bits (112), Expect = 6e-18 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 7503 AAATTAGGGCTACTGATAAACAATGATGAAACCATTCAATCCGCTGATTTCCTAACCTAT 7562 |||||||| || | || |||| |||||||| || | ||| || |||||||| | ||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 7563 GGTAAGGTTCCAATATTTAGAGGTAATATTCGCTGTTTGGAAACTAAAAGATGGTCTAGA 7622 || || || || ||||| |||| || ||| | | || || |||||||||||||| || Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277 Query 7623 GTGACTTGTGTCACTAATGATCAATTGCC 7651 || ||||| || | ||||||||| |||| Sbjct 2278 GTCACTTGCGTGTCCAATGATCAACTGCC 2306 >seq57646 Length=1202957 Score = 84.2 bits (92), Expect = 2e-12 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6805 TTATCGGACTGAAGGGAAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTTTTCTCTAA 6864 |||| || || | || ||||| || ||| |||||| | || | ||||| ||||| | Sbjct 1171119 TTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGA 1171060 Query 6865 TGTCCTGGGAATTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACG 6924 || | ||| || | ||||| || ||||||||||| || || || || |||| ||| || Sbjct 1171059 TGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATA 1171000 Query 6925 TCCCTCTCTTTAAAGGATTGACCATGGCAGATGA 6958 | || || ||| ||| || || ||||| ||||| Sbjct 1170999 TTCCACTATTTTCAGGGTTAACTATGGCCGATGA 1170966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37638556037720