Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_022581.1
Length=11806
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 111 1e-20
seq28589 102 6e-18
seq57646 84.2 2e-12
>seq40018
Length=56561
Score = 111 bits (122), Expect = 1e-20
Identities = 288/433 (67%), Gaps = 16/433 (4%)
Strand=Plus/Plus
Query 6876 TTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACGTCCCTCTCTTT 6935
|| || || ||||||||||| || || |||||||| ||||| || || || | || ||
Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607
Query 6936 AAAGGATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAA-GATGTTAGAAAGAAG 6994
||||| | || ||||||||||| | || | | ||| || |||| | || |
Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACT-GACAACAAAGATGATG--AACTAC 43664
Query 6995 TCAA--GGACAAGGAGAGGATGATTACGAGCACGTCAGCA----TTGCCAACCACATTGA 7048
||| ||||| | || |||| || || ||||| | | || || | || ||
Sbjct 43665 ACAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGA 43724
Query 7049 TTATGAAAAATGGAACAACCATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAGAGTCAT 7108
|| || ||||||||||| ||||||||| | | || ||| | | | | ||| | || ||
Sbjct 43725 CTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAAT 43784
Query 7109 GGGACAATTTCTGGGGTACCCTAGTTTGATAGAAAAGACCCATGACTTCTTTGAGCAAAG 7168
| | || |||||| || | ||| || || | ||| || || ||||||||| | ||
Sbjct 43785 GAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAG 43844
Query 7169 CTTGATCTATTATAATGGCAGACCTGACTTGATGCAGACAGATGGAGACGAGTTGCAA-- 7226
||||| || ||| | | |||||| ||||| | ||| ||| || ||| |
Sbjct 43845 TTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGA---AGATGATATGCTATT 43901
Query 7227 -AACCGAACGGAAGCTTTGGTGTGTTGGAATGGTCAGAAAGGAGGATTAGAAGGACTCAG 7285
||| ||| || |||||||| |||||||| || ||| || || ||||| || ||
Sbjct 43902 CAACTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAG 43961
Query 7286 GCAAAAAGGATGG 7298
||||||| |||
Sbjct 43962 ATAAAAAGGTTGG 43974
>seq28589
Length=6593
Score = 102 bits (112), Expect = 6e-18
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 7503 AAATTAGGGCTACTGATAAACAATGATGAAACCATTCAATCCGCTGATTTCCTAACCTAT 7562
|||||||| || | || |||| |||||||| || | ||| || |||||||| | |||
Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217
Query 7563 GGTAAGGTTCCAATATTTAGAGGTAATATTCGCTGTTTGGAAACTAAAAGATGGTCTAGA 7622
|| || || || ||||| |||| || ||| | | || || |||||||||||||| ||
Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277
Query 7623 GTGACTTGTGTCACTAATGATCAATTGCC 7651
|| ||||| || | ||||||||| ||||
Sbjct 2278 GTCACTTGCGTGTCCAATGATCAACTGCC 2306
>seq57646
Length=1202957
Score = 84.2 bits (92), Expect = 2e-12
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 6805 TTATCGGACTGAAGGGAAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTTTTCTCTAA 6864
|||| || || | || ||||| || ||| |||||| | || | ||||| ||||| |
Sbjct 1171119 TTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGA 1171060
Query 6865 TGTCCTGGGAATTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACG 6924
|| | ||| || | ||||| || ||||||||||| || || || || |||| ||| ||
Sbjct 1171059 TGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATA 1171000
Query 6925 TCCCTCTCTTTAAAGGATTGACCATGGCAGATGA 6958
| || || ||| ||| || || ||||| |||||
Sbjct 1170999 TTCCACTATTTTCAGGGTTAACTATGGCCGATGA 1170966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 37638556037720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |