Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_022755.1
Length=10692
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 95.1 8e-16
seq28589 87.8 1e-13
>seq57646
Length=1202957
Score = 95.1 bits (104), Expect = 8e-16
Identities = 316/482 (66%), Gaps = 15/482 (3%)
Strand=Plus/Minus
Query 5659 AATAGCTGGCCAAC-CATGGCTCAAATACTGGACTTTGGCGACAAATGGCATGAGTTACC 5717
|||| |||||||| ||| |||||||| | || ||||| ||| ||||||||| ||||
Sbjct 1171405 AATACATGGCCAACTCATT-CTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACC 1171347
Query 5718 TTTGATC-AAGTGTTTTGATATACCTGATCTGATAGATCCTTCTGTAATTTATGCTGACA 5776
|| ||| || || ||||| ||||| ||| | ||||||||| | |||||||| | || |
Sbjct 1171346 GTT-ATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATA 1171288
Query 5777 AGAGCCATTCAATGAACCGAAGTGAGG--TCATCCGCCATATATTGTACAAGTCTGACA- 5833
| || || || | | | | || | | ||||| || |||||| ||
Sbjct 1171287 AAAGTCACTC--TTATACTTTTTCAGAATTAAAGGAGCATATCTTA---AAGTCTCCCAA 1171233
Query 5834 --CACCAATTCCATCCAGGAAGGTTATGAAAACGATGTTAGAGACACCCGCCACCAACTG 5891
|||| | ||||| ||||| | || || | | | ||| ||||| || ||
Sbjct 1171232 TACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTG 1171173
Query 5892 GGTAGAATTCTTAGAGAGCATCGACAAAGAAGGATTGGACCATGAAGACCTTATTATAGG 5951
| |||||| | ||| || | | ||||| || || | | |||||||
Sbjct 1171172 GAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGG 1171113
Query 5952 CCTCAAAGCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTCTTCTCTCTAATGTCTTG 6011
|| | || || ||| | || | |||| ||||| | ||||||||||| ||| | ||
Sbjct 1171112 TCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATG 1171053
Query 6012 GAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTTGTTCCTTT 6071
| || | || || ||||| || |||||||||||||| || || | ||| | | |||| |
Sbjct 1171052 GCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACT 1170993
Query 6072 GTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATGATGGAGTC 6131
||| ||| | || ||||| || || | | | |||||||| || || || ||||
Sbjct 1170992 ATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT-ATAGAGTT 1170934
Query 6132 AT 6133
||
Sbjct 1170933 AT 1170932
>seq28589
Length=6593
Score = 87.8 bits (96), Expect = 1e-13
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 6611 CAATCATGGACGCAATAGAAACTGGGACGACCAAGCTGGGACTTATTATAAATCAG-GAT 6669
|||||||| | | ||| ||| | ||| || | || ||||| || || ||| |||
Sbjct 2126 CAATCATGAATGAAATCGAAGAGAGAGCGAGGAAATTAGGTCTTATAATCAA-CAGAGAT 2184
Query 6670 GAAACGATGCAATCTGCGGATTATCTAAATTATGGGAAGGTTCCAATATTTAGAGGAGTC 6729
||||| |||| |||||| |||| || | ||||||||| || || ||||| ||||| |
Sbjct 2185 GAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGAAAC 2244
Query 6730 ATCCGAGGTCTTGAATGCAAAAGATGGTCCAGAGTGACATGTGTCACCAATGATCAACTC 6789
|| | || | || ||||||||||| |||| || || || |||||||||||||
Sbjct 2245 ATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAACTG 2304
Query 6790 CC 6791
||
Sbjct 2305 CC 2306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 34076164242816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |