Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq57646 95.1 8e-16 seq28589 87.8 1e-13 >seq57646 Length=1202957 Score = 95.1 bits (104), Expect = 8e-16 Identities = 316/482 (66%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 5659 AATAGCTGGCCAAC-CATGGCTCAAATACTGGACTTTGGCGACAAATGGCATGAGTTACC 5717 |||| |||||||| ||| |||||||| | || ||||| ||| ||||||||| |||| Sbjct 1171405 AATACATGGCCAACTCATT-CTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACC 1171347 Query 5718 TTTGATC-AAGTGTTTTGATATACCTGATCTGATAGATCCTTCTGTAATTTATGCTGACA 5776 || ||| || || ||||| ||||| ||| | ||||||||| | |||||||| | || | Sbjct 1171346 GTT-ATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATA 1171288 Query 5777 AGAGCCATTCAATGAACCGAAGTGAGG--TCATCCGCCATATATTGTACAAGTCTGACA- 5833 | || || || | | | | || | | ||||| || |||||| || Sbjct 1171287 AAAGTCACTC--TTATACTTTTTCAGAATTAAAGGAGCATATCTTA---AAGTCTCCCAA 1171233 Query 5834 --CACCAATTCCATCCAGGAAGGTTATGAAAACGATGTTAGAGACACCCGCCACCAACTG 5891 |||| | ||||| ||||| | || || | | | ||| ||||| || || Sbjct 1171232 TACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTG 1171173 Query 5892 GGTAGAATTCTTAGAGAGCATCGACAAAGAAGGATTGGACCATGAAGACCTTATTATAGG 5951 | |||||| | ||| || | | ||||| || || | | ||||||| Sbjct 1171172 GAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGG 1171113 Query 5952 CCTCAAAGCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTCTTCTCTCTAATGTCTTG 6011 || | || || ||| | || | |||| ||||| | ||||||||||| ||| | || Sbjct 1171112 TCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATG 1171053 Query 6012 GAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTTGTTCCTTT 6071 | || | || || ||||| || |||||||||||||| || || | ||| | | |||| | Sbjct 1171052 GCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACT 1170993 Query 6072 GTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATGATGGAGTC 6131 ||| ||| | || ||||| || || | | | |||||||| || || || |||| Sbjct 1170992 ATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT-ATAGAGTT 1170934 Query 6132 AT 6133 || Sbjct 1170933 AT 1170932 >seq28589 Length=6593 Score = 87.8 bits (96), Expect = 1e-13 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 6611 CAATCATGGACGCAATAGAAACTGGGACGACCAAGCTGGGACTTATTATAAATCAG-GAT 6669 |||||||| | | ||| ||| | ||| || | || ||||| || || ||| ||| Sbjct 2126 CAATCATGAATGAAATCGAAGAGAGAGCGAGGAAATTAGGTCTTATAATCAA-CAGAGAT 2184 Query 6670 GAAACGATGCAATCTGCGGATTATCTAAATTATGGGAAGGTTCCAATATTTAGAGGAGTC 6729 ||||| |||| |||||| |||| || | ||||||||| || || ||||| ||||| | Sbjct 2185 GAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGAAAC 2244 Query 6730 ATCCGAGGTCTTGAATGCAAAAGATGGTCCAGAGTGACATGTGTCACCAATGATCAACTC 6789 || | || | || ||||||||||| |||| || || || ||||||||||||| Sbjct 2245 ATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAACTG 2304 Query 6790 CC 6791 || Sbjct 2305 CC 2306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34076164242816