Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq40018 158 9e-35 seq57646 95.1 9e-16 seq28589 86.0 4e-13 >seq40018 Length=56561 Score = 158 bits (174), Expect = 9e-35 Identities = 330/492 (67%), Gaps = 16/492 (3%) Strand=Plus/Plus Query 6212 GATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTGATGTCAT 6271 |||| ||||| ||||||||||| || |||| ||| |||| ||| || Sbjct 43495 GATTGAAGGGTAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCACA---------- 43544 Query 6272 GGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTACGTTCCCT 6331 || ||||| ||||||||||| ||||| |||||| | || |||||| |||| || || Sbjct 43545 --AGCTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCC 43602 Query 6332 TGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATGATGGACA 6391 |||| || || | |||||||||||||| || || | ||| | ||||||||| || Sbjct 43603 TGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACT 43662 Query 6392 GTTCATCAGGTCAAGGGCTCGATGATTAT--TCA--TCAGTTTGTTTGGCTAACCATATT 6447 || | || || | || || ||||| ||| ||||| | | || || | || Sbjct 43663 ACACAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATA 43722 Query 6448 GACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTCAGAGTC 6507 ||||| ||||| ||||| || ||||||| | |||| || ||| |||||| | || Sbjct 43723 GACTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTA 43782 Query 6508 ATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGAGAAA 6567 ||| | ||| |||| | ||| | || ||||| || || ||||| |||||||| Sbjct 43783 ATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAG 43842 Query 6568 AGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACATTGTGT 6627 || || ||||| || | |||||||| |||| || | ||| | | | Sbjct 43843 AGTTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTC 43902 Query 6628 AATTCCACTAAGCACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGACTAAGA 6687 || || ||| | ||| || |||||||| ||| ||| ||||||||||| |||||| Sbjct 43903 AACTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGA 43962 Query 6688 CAAAAGGGATGG 6699 |||| || ||| Sbjct 43963 TAAAAAGGTTGG 43974 >seq57646 Length=1202957 Score = 95.1 bits (104), Expect = 9e-16 Identities = 306/471 (65%), Gaps = 8/471 (2%) Strand=Plus/Minus Query 5917 AATAAGACATGGCCCACAGCAGCCAAAATTCAAGACTTTGGTGACAATTGGCACAAGCTT 5976 ||||| |||||||| || | |||| || ||||||||| ||||| | || Sbjct 1171408 AATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTA 1171349 Query 5977 CCATTAATTCAATGTTTTGAAATACCTGATTTAATAGACCCATCGGTGATTTATTCAGAC 6036 || ||| | |||| ||||| ||||| ||| ||||||| || | ||||||||||| Sbjct 1171348 CCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGAT 1171289 Query 6037 AAAAGTCATTCCATGAACAAAAAGGAGGTAATACAGCATGTTCGGTCAAAG---CCGAAT 6093 |||||||| || | || ||| ||||| | | |||| || ||| Sbjct 1171288 AAAAGTCACTCTTATACTTTTTCAGAATTAAAGGAGCATATC---TTAAAGTCTCCCAAT 1171232 Query 6094 GTTCCAATCCCAAGCAGGAAAGTTCTGCAAACAATGCTTACCAATAGG-GCAACAAACTG 6152 || ||||| || || || | ||| | ||| | || || || ||||| || Sbjct 1171231 ACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTT-CAAACAGAAGCCACAAATTG 1171173 Query 6153 GAAAGCCTTTCTGAAAGATATCGACGAAAATGGAATGGATGATGACGATTTGATAATTGG 6212 ||| | || || || | || | || |||| | || || |||| | || || Sbjct 1171172 GAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGG 1171113 Query 6213 ATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTGATGTCATG 6272 ||| || |||||||||||| | |||| | || ||||||||||| ||||| |||| Sbjct 1171112 TCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATG 1171053 Query 6273 GAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTACGTTCCCTT 6332 | | | ||||| || ||||| || || ||||| | || |||| |||| |||| | Sbjct 1171052 GCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACT 1170993 Query 6333 GTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGAT 6383 ||| |||||||||||||| ||||| | | || || || || ||||| Sbjct 1170992 ATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq28589 Length=6593 Score = 86.0 bits (94), Expect = 4e-13 Identities = 133/187 (71%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 6864 CAATAATAA---AATCATGGAAGAAATT-AAGAGAGGGACAGAGAAGTTGGGCCTAATCA 6919 |||||| || ||||||| | ||||| ||||||| | || ||| || || || || | Sbjct 2115 CAATAACAATTCAATCATGAATGAAATCGAAGAGAGAGCGAG-GAAATTAGGTCTTATAA 2173 Query 6920 TAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTT 6979 | || ||||| ||||||| ||| ||||| | | | ||| |||||| | || | | Sbjct 2174 TCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTAT 2233 Query 6980 TCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTA 7039 | || ||| ||| || ||| |||| || || ||||||||||| || || || || | | Sbjct 2234 TTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCA 2293 Query 7040 ATGATCA 7046 ||||||| Sbjct 2294 ATGATCA 2300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35454432522532