Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq40018 150 1e-32 seq28589 84.2 2e-12 >seq40018 Length=56561 Score = 150 bits (166), Expect = 1e-32 Identities = 241/337 (72%), Gaps = 12/337 (4%) Strand=Plus/Plus Query 6342 AGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCACTTTGTCCCGATGTTTAAA 6401 ||||| |||||||| ||||| ||||| ||||||| || |||| ||| | |||| ||| Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610 Query 6402 GGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAAGATGATGGAC-ACATCTTC 6460 || | || ||||| ||||| | || | ||| || ||||||||| || ||| | | Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACA-CAAC 43669 Query 6461 AGGACAAGGCTTAGATAATTATGA--ATC-CATTTG-TATAGCCAACCATATTGACTATG 6516 ||||| | || |||||||||| || || | | |||||| || | || ||||| | Sbjct 43670 GGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGG 43729 Query 6517 AGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTTCAAGGTGATGGGTC 6576 |||| ||||||||| ||||||| | | | || ||| | | | ||| || ||| || Sbjct 43730 AGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTG 43789 Query 6577 AATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATTTTTTGAGAAGAGTCTGA 6636 |||||||| | ||| | | |||||||| || || ||||| |||||||||||| ||| Sbjct 43790 CGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGA 43849 Query 6637 TATATTACAATG--GA-CGACCAGATCTGATGCGGGT 6670 | |||| ||| || ||| ||||||||| |||| Sbjct 43850 T---TTACTATGCCGATAAACCTGATCTGATGAGGGT 43883 >seq28589 Length=6593 Score = 84.2 bits (92), Expect = 2e-12 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 6965 GAAACTGGGTCTTTTGATTAATGATGATGAGACAATGCAATCTGCTGATTACCTCAATTA 7024 |||| | |||||| | || || ||||| || |||| |||||| |||| ||| | ||| Sbjct 2157 GAAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTA 2216 Query 7025 CGGGAAGGTTCCCATTTTCAGAGGAGTAATCAGAGGCCTTGAGACAAAAAGATGGTCACG 7084 ||||| || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 2217 TGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACG 2276 Query 7085 CGTGACCTGTGTGACAAATGATCA 7108 || || || ||| | |||||||| Sbjct 2277 AGTCACTTGCGTGTCCAATGATCA 2300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35492806581364