Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_025255.1
Length=11135
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 150 1e-32
seq28589 84.2 2e-12
>seq40018
Length=56561
Score = 150 bits (166), Expect = 1e-32
Identities = 241/337 (72%), Gaps = 12/337 (4%)
Strand=Plus/Plus
Query 6342 AGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCACTTTGTCCCGATGTTTAAA 6401
||||| |||||||| ||||| ||||| ||||||| || |||| ||| | |||| |||
Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610
Query 6402 GGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAAGATGATGGAC-ACATCTTC 6460
|| | || ||||| ||||| | || | ||| || ||||||||| || ||| | |
Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACA-CAAC 43669
Query 6461 AGGACAAGGCTTAGATAATTATGA--ATC-CATTTG-TATAGCCAACCATATTGACTATG 6516
||||| | || |||||||||| || || | | |||||| || | || ||||| |
Sbjct 43670 GGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGG 43729
Query 6517 AGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTTCAAGGTGATGGGTC 6576
|||| ||||||||| ||||||| | | | || ||| | | | ||| || ||| ||
Sbjct 43730 AGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTG 43789
Query 6577 AATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATTTTTTGAGAAGAGTCTGA 6636
|||||||| | ||| | | |||||||| || || ||||| |||||||||||| |||
Sbjct 43790 CGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGA 43849
Query 6637 TATATTACAATG--GA-CGACCAGATCTGATGCGGGT 6670
| |||| ||| || ||| ||||||||| ||||
Sbjct 43850 T---TTACTATGCCGATAAACCTGATCTGATGAGGGT 43883
>seq28589
Length=6593
Score = 84.2 bits (92), Expect = 2e-12
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 6965 GAAACTGGGTCTTTTGATTAATGATGATGAGACAATGCAATCTGCTGATTACCTCAATTA 7024
|||| | |||||| | || || ||||| || |||| |||||| |||| ||| | |||
Sbjct 2157 GAAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTA 2216
Query 7025 CGGGAAGGTTCCCATTTTCAGAGGAGTAATCAGAGGCCTTGAGACAAAAAGATGGTCACG 7084
||||| || || | || ||||| || || || | ||||| ||||||||||||||
Sbjct 2217 TGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACG 2276
Query 7085 CGTGACCTGTGTGACAAATGATCA 7108
|| || || ||| | ||||||||
Sbjct 2277 AGTCACTTGCGTGTCCAATGATCA 2300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35492806581364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |