Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq57646 95.1 9e-16 >seq57646 Length=1202957 Score = 95.1 bits (104), Expect = 9e-16 Identities = 305/461 (66%), Gaps = 22/461 (5%) Strand=Plus/Minus Query 5972 CATAAAGGACAATGTCTGGCCAACTCCTAAGGTGATAGAAGACTTTGGTGATCGATGGCA 6031 ||| ||| | ||| |||||||||| | |||| || |||||||| |||||||| Sbjct 1171415 CATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCA 1171356 Query 6032 CACTCTTCCGTTACTTCAATGCTTTGATATCCCGGACGTGATAGATCCTAGTCTTCTGTA 6091 || |||||| | |||||||||| || || || || |||||||||||| | | || Sbjct 1171355 TGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTA 1171296 Query 6092 CTCTGATAAGAGTCATTCTCGGGAT-----AGAAGTGAAGTAATCAGTTTCTTGCAATCT 6146 || ||||| ||||| ||| | |||| | ||| | || | |||| || | Sbjct 1171295 TTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAG-GAGCA-TATCTT--AAAGT 1171240 Query 6147 CACCCAGGTGAGGTTATCCCCACTGAGAAAGTCCTGAATACCTTGTTGAAAACAAAAGGA 6206 | |||| | | |||| || | || || || || || || | ||||| ||| Sbjct 1171239 CTCCCA-ATACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCC 1171181 Query 6207 ACCAATTGGCCTGAATTCCTCCACCAGGTGAATGAGACAGGCTTACCTGAG---GACTCA 6263 || |||||| ||||||||| | || | ||||| || ||| ||| || || Sbjct 1171180 ACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTA---GAGTTAGA-GCA 1171125 Query 6264 TTGA-TCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTC 6322 || | | || || | | ||||||||| |||||| | ||| | ||| | ||||| || Sbjct 1171124 TTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTC 1171065 Query 6323 ACTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACA 6382 || ||| | ||| |||| || || || ||||| | ||||| || || || ||| || Sbjct 1171064 TCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCA 1171005 Query 6383 -TTTCGTCC-CTCTCTTCAATGGATTGACTATGGCGGATGA 6421 | | ||| || | |||| || || |||||||| ||||| Sbjct 1171004 CTATATTCCACTATTTTCA--GGGTTAACTATGGCCGATGA 1170966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35505597934308