Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_025341.1
Length=11139
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 95.1 9e-16
>seq57646
Length=1202957
Score = 95.1 bits (104), Expect = 9e-16
Identities = 305/461 (66%), Gaps = 22/461 (5%)
Strand=Plus/Minus
Query 5972 CATAAAGGACAATGTCTGGCCAACTCCTAAGGTGATAGAAGACTTTGGTGATCGATGGCA 6031
||| ||| | ||| |||||||||| | |||| || |||||||| ||||||||
Sbjct 1171415 CATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCA 1171356
Query 6032 CACTCTTCCGTTACTTCAATGCTTTGATATCCCGGACGTGATAGATCCTAGTCTTCTGTA 6091
|| |||||| | |||||||||| || || || || |||||||||||| | | ||
Sbjct 1171355 TGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTA 1171296
Query 6092 CTCTGATAAGAGTCATTCTCGGGAT-----AGAAGTGAAGTAATCAGTTTCTTGCAATCT 6146
|| ||||| ||||| ||| | |||| | ||| | || | |||| || |
Sbjct 1171295 TTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAG-GAGCA-TATCTT--AAAGT 1171240
Query 6147 CACCCAGGTGAGGTTATCCCCACTGAGAAAGTCCTGAATACCTTGTTGAAAACAAAAGGA 6206
| |||| | | |||| || | || || || || || || | ||||| |||
Sbjct 1171239 CTCCCA-ATACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCC 1171181
Query 6207 ACCAATTGGCCTGAATTCCTCCACCAGGTGAATGAGACAGGCTTACCTGAG---GACTCA 6263
|| |||||| ||||||||| | || | ||||| || ||| ||| || ||
Sbjct 1171180 ACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTA---GAGTTAGA-GCA 1171125
Query 6264 TTGA-TCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTC 6322
|| | | || || | | ||||||||| |||||| | ||| | ||| | ||||| ||
Sbjct 1171124 TTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTC 1171065
Query 6323 ACTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACA 6382
|| ||| | ||| |||| || || || ||||| | ||||| || || || ||| ||
Sbjct 1171064 TCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCA 1171005
Query 6383 -TTTCGTCC-CTCTCTTCAATGGATTGACTATGGCGGATGA 6421
| | ||| || | |||| || || |||||||| |||||
Sbjct 1171004 CTATATTCCACTATTTTCA--GGGTTAACTATGGCCGATGA 1170966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35505597934308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |