Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_025353.1
Length=11070
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 136 3e-28
seq57646 122 6e-24
>seq40018
Length=56561
Score = 136 bits (150), Expect = 3e-28
Identities = 273/406 (67%), Gaps = 18/406 (4%)
Strand=Plus/Plus
Query 6217 ATGGCTTAGAACTGGAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAAT 6276
|||| ||| ||| || || | || ||| | |||| || |||||| |||| ||||||
Sbjct 43465 ATGGATTATCACTAGAGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAA 43524
Query 6277 TGGCCGGCAGAtttttttCTCTTATGTCCTGGAAG-TTGAGAGAATATTTCGTCATTACG 6335
| || ||||||| | ||| || ||||||||||| || || ||
Sbjct 43525 GGATTGGTCGATTTTTCAC-------------AAGCTTAAGAGAATATTTTGTAATCACC 43571
Query 6336 GAGTATTTAATAAAGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGAT 6395
||||| | || || ||||| | ||| || |||| || || | || ||||||||||||
Sbjct 43572 GAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGAT 43631
Query 6396 CTAACAGCTGTCATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTAC 6455
||||| | | | || || |||||| | | || | ||||||| | | |||||||
Sbjct 43632 CTAACCACACTGACAACAAAGATGATGAACTACACAACGGGACAGGATCTAAATAATTAT 43691
Query 6456 GAC----TCAATTTGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCG 6511
|| ||| | ||||| |||| || || || ||||| ||||||||| | || |
Sbjct 43692 GATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAG 43751
Query 6512 GAAAGAATCCAATGGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTT 6571
|| | ||||||| ||| | || | |||||| | ||| | || | || |||||
Sbjct 43752 GAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTT 43811
Query 6572 GATTGAACGCACCCATGAATTCTTTGAAAAAAGTCTGATTTACTAT 6617
||||| | || || ||||||||||| || ||| |||||||||||
Sbjct 43812 AATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGATTTACTAT 43857
>seq57646
Length=1202957
Score = 122 bits (134), Expect = 6e-24
Identities = 372/568 (65%), Gaps = 14/568 (2%)
Strand=Plus/Minus
Query 5839 TAGCAAGTGATCTGGCACGGATTGTTTTGCAGCAACAATTCAGTGAAAACAAAAAATGGT 5898
|||| ||||| ||||| ||||| || || | ||||| | ||| ||||||||||
Sbjct 1171521 TAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAAAAATGGT 1171462
Query 5899 TTGTGGATAAATCCGCAATTCCTAAGA-AACATCCTTTTTATAACCACATCACAGAA-AA 5956
|||| ||| | | ||||| |||| | ||| | ||| ||||||| | |||| ||
Sbjct 1171461 TTGTCAATATCGCAGGTATTCC-AAGAGATCATGTACTCTATGACCACATTA-AGAATAA 1171404
Query 5957 CACTTGGCCTACAGCAGCCCAAATACAAGACTTTGGAGATCACTGGCATGAATTACCTTT 6016
|| ||||| || | |||||| || ||||| || | ||||||||| |||| ||
Sbjct 1171403 TACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTT 1171344
Query 6017 GACGAAGTGTTTTGAAATCCCTGATCTTATTGATCCATCAATCATATATTCAGACAAGAG 6076
| || || ||||| || || ||| | || ||||| | || |||||||| || ||
Sbjct 1171343 ATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAG 1171284
Query 6077 TCATTCCATGAATAGATCTGATGTCTTGAGGCATGTTCGCAATTCTCCAAACACTCCCAT 6136
||| || | | || || | | |||| | || ||||| || || || |
Sbjct 1171283 TCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCAATACACCTGT 1171224
Query 6137 TCCAAGCAGAAAGGTGTTGCAGACAATGCTTGAAACAAAGGCAACAAATTGGGGAGAATT 6196
||| ||||| | ||||| | ||| ||||| | || ||||||||| ||||
Sbjct 1171223 CCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTGGAAGGAAT- 1171165
Query 6197 TTTGTCATCAA-TAGACAAA----TATGGCTTAGAACTGGAAGATTTGGTCATCGGGCTG 6251
|| |||| ||| ||| | ||| ||||| | || |||| || || || ||
Sbjct 1171164 ----TCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTA 1171109
Query 6252 AAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTATGTCCTGGAAG 6311
| |||||||||| ||||| ||||| || ||||| || ||||| ||| | ||| |
Sbjct 1171108 AGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAA 1171049
Query 6312 TTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTGTCCCCATGTTT 6371
| || || || || || || || |||||| | || || | || | | | || | |||
Sbjct 1171048 CTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTT 1170989
Query 6372 AAGGGATTGACAATGGCAGATGATCTAA 6399
|| || || ||||| |||||| |||
Sbjct 1170988 TCAGGGTTAACTATGGCCGATGATTTAA 1170961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35284947096024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |