Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq40018 136 3e-28 seq57646 122 6e-24 >seq40018 Length=56561 Score = 136 bits (150), Expect = 3e-28 Identities = 273/406 (67%), Gaps = 18/406 (4%) Strand=Plus/Plus Query 6217 ATGGCTTAGAACTGGAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAAT 6276 |||| ||| ||| || || | || ||| | |||| || |||||| |||| |||||| Sbjct 43465 ATGGATTATCACTAGAGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAA 43524 Query 6277 TGGCCGGCAGAtttttttCTCTTATGTCCTGGAAG-TTGAGAGAATATTTCGTCATTACG 6335 | || ||||||| | ||| || ||||||||||| || || || Sbjct 43525 GGATTGGTCGATTTTTCAC-------------AAGCTTAAGAGAATATTTTGTAATCACC 43571 Query 6336 GAGTATTTAATAAAGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGAT 6395 ||||| | || || ||||| | ||| || |||| || || | || |||||||||||| Sbjct 43572 GAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGAT 43631 Query 6396 CTAACAGCTGTCATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTAC 6455 ||||| | | | || || |||||| | | || | ||||||| | | ||||||| Sbjct 43632 CTAACCACACTGACAACAAAGATGATGAACTACACAACGGGACAGGATCTAAATAATTAT 43691 Query 6456 GAC----TCAATTTGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCG 6511 || ||| | ||||| |||| || || || ||||| ||||||||| | || | Sbjct 43692 GATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAG 43751 Query 6512 GAAAGAATCCAATGGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTT 6571 || | ||||||| ||| | || | |||||| | ||| | || | || ||||| Sbjct 43752 GAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTT 43811 Query 6572 GATTGAACGCACCCATGAATTCTTTGAAAAAAGTCTGATTTACTAT 6617 ||||| | || || ||||||||||| || ||| ||||||||||| Sbjct 43812 AATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGATTTACTAT 43857 >seq57646 Length=1202957 Score = 122 bits (134), Expect = 6e-24 Identities = 372/568 (65%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 5839 TAGCAAGTGATCTGGCACGGATTGTTTTGCAGCAACAATTCAGTGAAAACAAAAAATGGT 5898 |||| ||||| ||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1171521 TAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAAAAATGGT 1171462 Query 5899 TTGTGGATAAATCCGCAATTCCTAAGA-AACATCCTTTTTATAACCACATCACAGAA-AA 5956 |||| ||| | | ||||| |||| | ||| | ||| ||||||| | |||| || Sbjct 1171461 TTGTCAATATCGCAGGTATTCC-AAGAGATCATGTACTCTATGACCACATTA-AGAATAA 1171404 Query 5957 CACTTGGCCTACAGCAGCCCAAATACAAGACTTTGGAGATCACTGGCATGAATTACCTTT 6016 || ||||| || | |||||| || ||||| || | ||||||||| |||| || Sbjct 1171403 TACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTT 1171344 Query 6017 GACGAAGTGTTTTGAAATCCCTGATCTTATTGATCCATCAATCATATATTCAGACAAGAG 6076 | || || ||||| || || ||| | || ||||| | || |||||||| || || Sbjct 1171343 ATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAG 1171284 Query 6077 TCATTCCATGAATAGATCTGATGTCTTGAGGCATGTTCGCAATTCTCCAAACACTCCCAT 6136 ||| || | | || || | | |||| | || ||||| || || || | Sbjct 1171283 TCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCAATACACCTGT 1171224 Query 6137 TCCAAGCAGAAAGGTGTTGCAGACAATGCTTGAAACAAAGGCAACAAATTGGGGAGAATT 6196 ||| ||||| | ||||| | ||| ||||| | || ||||||||| |||| Sbjct 1171223 CCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTGGAAGGAAT- 1171165 Query 6197 TTTGTCATCAA-TAGACAAA----TATGGCTTAGAACTGGAAGATTTGGTCATCGGGCTG 6251 || |||| ||| ||| | ||| ||||| | || |||| || || || || Sbjct 1171164 ----TCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTA 1171109 Query 6252 AAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTATGTCCTGGAAG 6311 | |||||||||| ||||| ||||| || ||||| || ||||| ||| | ||| | Sbjct 1171108 AGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAA 1171049 Query 6312 TTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTGTCCCCATGTTT 6371 | || || || || || || || |||||| | || || | || | | | || | ||| Sbjct 1171048 CTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTT 1170989 Query 6372 AAGGGATTGACAATGGCAGATGATCTAA 6399 || || || ||||| |||||| ||| Sbjct 1170988 TCAGGGTTAACTATGGCCGATGATTTAA 1170961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35284947096024