Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq40018 150 1e-32 seq28589 120 2e-23 seq57646 114 9e-22 >seq40018 Length=56561 Score = 150 bits (166), Expect = 1e-32 Identities = 289/424 (68%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 6376 AGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTATGTACCATTATTCAAA 6435 |||||||||||||| |||||||||||| | || || || || |||||| | | || ||| Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610 Query 6436 GGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTTGGACAACACGAAT 6495 || ||||| ||||| |||||||| || || | || |||||| || || |||| | Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACAACG 43670 Query 6496 GGACAAGGACTGGATGATTAT--TCA--TCGATTTGCATCGCCAATCACATCGACTATGA 6551 ||||| | || || ||||| ||| || | || || |||| || ||||| || Sbjct 43671 GGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGA 43730 Query 6552 GAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTCATGGGGCA 6611 ||| ||||| ||| |||| || | | ||||||| | | | || || || ||| | Sbjct 43731 GAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTGC 43790 Query 6612 GTTTTTGGGTTATCCCAGATTGTTTGAAAGAACCCATGAGTTTTTTGAATCAAGCCTCAT 6671 ||| ||||| | ||| | || |||| || || || || || ||||| || | || Sbjct 43791 GTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGAT 43850 Query 6672 TTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTCGTTGATCAATACCAC 6731 |||||| || | ||| || ||||| ||| || ||| | | |||| | || Sbjct 43851 TTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAACTCAAC 43910 Query 6732 TGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGG 6791 ||| | ||||||||| ||| | || || || || |||||||| | ||| ||||||| Sbjct 43911 TGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAAAGG 43970 Query 6792 ATGG 6795 ||| Sbjct 43971 TTGG 43974 >seq28589 Length=6593 Score = 120 bits (132), Expect = 2e-23 Identities = 212/304 (70%), Gaps = 9/304 (3%) Strand=Plus/Plus Query 6956 ATAACAATCAGACAATCATGAATAGTATCGT-GACAGGGACAGGTAAGTTGGGATTGATC 7014 |||||||| ||||||||||| |||| || || | ||| || | || || || Sbjct 2117 ATAACAATT---CAATCATGAATGAAATCGAAGAGAGAGCGAGGAAATTAGGTCTT-ATA 2172 Query 7015 ATAAATAATGATGAGACCATGCAATCTGCAGATTACCTTAATTACGGAAAAATGCCAGTC 7074 || || | ||||| || |||| ||||||||||| ||| | ||| || ||| | || || Sbjct 2173 ATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTA 2232 Query 7075 TTCCGAGGAATCCTAAGAGGATTAGAGACTAAAAGATGGTCCAGGGTCACATGCATCACG 7134 || ||||||| | | || ||||||||||||||||||||||| | ||||| ||| | | Sbjct 2233 TTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCC 2292 Query 7135 AATGATCAGATTCCAACATTGGCAGGAGTA--ATGTCTTCTGTGTCAACAAATGCACTGA 7192 |||||||| | || ||| | ||| || |||| |||| || ||||||| ||| Sbjct 2293 AATGATCAACTGCCCGGATTAG--GGAATATCTTGTCGACTGTATCTTCAAATGCCTTGA 2350 Query 7193 CAGTAGCTCATTTTGCGGCTAGTCCTATAAATGCCATTTTACAGTACCACTACTTCGCAA 7252 |||| | || | ||| || || | ||| | || |||| ||| ||| ||| | | Sbjct 2351 CAGTCTCACACTACTCGGAAAGCCCATTGAATTCTCTTATACACTACAACTTCTTGGGGA 2410 Query 7253 ATTT 7256 |||| Sbjct 2411 ATTT 2414 >seq57646 Length=1202957 Score = 114 bits (126), Expect = 9e-22 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 6304 ATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATG 6363 ||||| |||| |||||||||||||||| | |||| || |||||||| || |||||| Sbjct 1171117 ATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATG 1171058 Query 6364 TCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTA-CTTAATAAAGACTCATTATGT 6422 | |||||||| || || || ||||| || || ||||| |||| |||| | ||| ||| | Sbjct 1171057 ACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAA-ATTCACTATAT 1170999 Query 6423 ACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGAT 6479 ||| |||| ||| | || ||||| |||||| | | |||||| | || ||||| Sbjct 1170998 TCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35371288728396