Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq57646 116 4e-22 >seq57646 Length=1202957 Score = 116 bits (128), Expect = 4e-22 Identities = 295/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 9888 ATAGATGAATTTGGGGATCACTGGCATGAATTACCACTGACACAATGTTATGAGATACCA 9947 |||| ||| ||||| || | ||||||||| |||| | | |||| | ||||||||| Sbjct 1171381 ATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTTATCTAAATGCTTTGAGATACCC 1171322 Query 9948 GATATGATAGACATCAGTCAGATTTATTCAGATAAGAGTCACTCATTGGATAGGTCTGAG 10007 ||| | ||||| ||| |||||||||||||| |||||||| | ||| | | Sbjct 1171321 GATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCTT---ATACTTTTTCA 1171265 Query 10008 GTTTTAAAGAT---TATC---AAGGAACAAAAACATAAAAGGATCCCTACTAAAAGGGTA 10061 | |||||| |||| ||| | || || | |||| || | | |||| Sbjct 1171264 GAATTAAAGGAGCATATCTTAAAGTCTCCCAA---TACACCTGTCCCATCTCATAAGGTA 1171208 Query 10062 CTACAGACATTACTTGAAAAGCCAGCTACGAATTGGCCTGAATTTCTTAAAGCAATTAAT 10121 || ||||||| ||| ||| ||| || |||||| ||||| || || || ||| Sbjct 1171207 CTCAAGACATTCCTTCAAACAGAAGCCACAAATTGGAAGGAATTCCTCAAGAAGATAAAT 1171148 Query 10122 GATCACGGACTAGATTGGGAAAAATTGGTGATTGGGTTGAAAGCTAAGGAACGAGAACTT 10181 ||| ||| |||| | || | || || || || | | || || ||| ||||| | Sbjct 1171147 GATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATA 1171088 Query 10182 AAAGAAGAAGGTAGATTCTTTTCTTTAATGTCTTACGAATTGAGGGATTATTTTGTATCT 10241 ||| | |||||||||||| ||| | ||| | | || | |||||||| |||||| Sbjct 1171087 AAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATA 1171028 Query 10242 ACTGAATACCTGATCAAGAAATATTTTGTACCCTTATTTGAAGGTCTAACAATGGCTGAT 10301 || || || || || || | | | | | || ||||| ||| |||| ||||| ||| Sbjct 1171027 ACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGAT 1170968 Query 10302 GATTTGAATACAGTAATTAAGAAGAT 10327 ||||| ||| |||| || || ||||| Sbjct 1170967 GATTTAAATTCAGTTATGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47925101688569