Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq40018 125 5e-25 seq57646 102 6e-18 seq28589 102 6e-18 >seq40018 Length=56561 Score = 125 bits (138), Expect = 5e-25 Identities = 331/498 (66%), Gaps = 28/498 (6%) Strand=Plus/Plus Query 6297 GATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTC---TTTTCACTGATGT 6353 |||||||||| ||||| ||||||||||| | ||| | || ||||||| Sbjct 43495 GATTGAAGGGTAAAGAAAGAGAGTTAAAAA-----GGATTGGTCGATTTTTCACAA---- 43545 Query 6354 CTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATGTTC 6413 || || ||||| || ||||| || || || || |||||||| || || ||||| Sbjct 43546 ----GC--TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTAT 43599 Query 6414 CACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATGTTGG 6473 | || || ||||| | |||||||||||||| || || || | | |||||| || Sbjct 43600 CCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGA 43659 Query 6474 ACAACACAAACGGACAAGGAT-TAGACGACTAT--TCA--TCGATTTGTATAGCGAATCA 6528 || |||||| |||| ||||| || | | ||| ||| || | |||||| |||| Sbjct 43660 ACTACACAACGGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCT 43718 Query 6529 CATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTCG 6588 || || || || |||||||||||| |||| |||| | | || || | | | |||| || Sbjct 43719 AATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCG 43778 Query 6589 CGTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTTGA 6648 || ||| | || ||||| | ||| | ||||||| || ||||| |||||||| Sbjct 43779 TGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGA 43838 Query 6649 ATCCAGCCTCATTTACTACAATGGCAGACCAGATTTGAT--GGATGTGAGGGGAGATTCT 6706 || | |||||||| | | ||| ||| |||| || | || || || || Sbjct 43839 GAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCT 43898 Query 6707 TTGGTCAACACCACAGAAAAGCTGGTTTGTTGGGAAGGCCAAGCAGGAGGGCTAGAAGGA 6766 | ||||| | || || | | |||| || ||| | || ||| ||| || | ||||| Sbjct 43899 AT--TCAACTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGG 43956 Query 6767 TTGAGGCAAAAAGGATGG 6784 | || ||||||| ||| Sbjct 43957 CTAAGATAAAAAGGTTGG 43974 >seq57646 Length=1202957 Score = 102 bits (112), Expect = 6e-18 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6305 GGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGATGTCTTGGCAGTTG 6364 || ||||| ||||| |||| | || || ||||| || |||||| | ||||| | Sbjct 1171105 GGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTC 1171046 Query 6365 AGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATGTTCCACTATTTAAA 6424 || || |||||||| ||||| || ||||| ||||| | || ||| ||||||||||| | Sbjct 1171045 AGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCA 1170986 Query 6425 GGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGAT 6468 || || |||||||| ||||| | | ||||| |||| ||||| Sbjct 1170985 GGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq28589 Length=6593 Score = 102 bits (112), Expect = 6e-18 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 6989 AAATTGGGACTAATCATCAACAATGATGAAACTATGCAATCTGCTGATTATCTCAATTAT 7048 ||||| || || || ||||||| ||||||||||||| |||||| |||| || | |||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 7049 GGAAAGATGCCAGTATTCCGAGGCATCCTACGAGGGCTGGAGACTAAGAGATGGTCCAGA 7108 || || | || ||||| ||||| | | | | || | |||||||| |||||||| || Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277 Query 7109 GTCACATGCATCACCAATGACCAA 7132 ||||| ||| | ||||||| ||| Sbjct 2278 GTCACTTGCGTGTCCAATGATCAA 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35323321154856