Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq40018 127 1e-25 seq57646 78.8 7e-11 >seq40018 Length=56561 Score = 127 bits (140), Expect = 1e-25 Identities = 289/429 (67%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 6372 TTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATGTCCCGTTGTTC 6431 ||||| || || || || ||||| |||||| |||| |||||||||||||| | |||| Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 6432 AAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAACACA 6491 || || || || ||||||||||| || || | | | |||||| || || ||||| Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667 Query 6492 AATGGACAAGGAT-TGGATGACTACTCCTC-TATCTG----TATTGCCAACCACATTGAC 6545 | |||| ||||| | || | || | || | || | ||| || || | || ||| Sbjct 43668 ACGGGAC-AGGATCTAAATAATTA-TGATCATGTCAGTAGATATAGCAAATCTAATAGAC 43725 Query 6546 TACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATG 6605 || || |||||||| ||| |||| |||| | | || || ||| | || || |||||| Sbjct 43726 TAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATG 43785 Query 6606 GGACAGTTTCTAGGGTATCCTAGACTGTTTGAAAGGACACATGAGTTCTTTGAGTCCAGC 6665 | ||| | |||| ||| | | |||| |||||||| || ||||||||| || Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 6666 CTCATCTACTACAATGGAAGACCAGACCTGATGGATGTGAGAGGGGATTCATTGATCAAC 6725 | || ||||| | | ||| || |||||| || || ||| | ||||| Sbjct 43846 TTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAAC 43905 Query 6726 ACTACAGACAAATTAGTGTGTTGGGAGGGACAAGCAGGAGGTCTGGAAGGATTGCGACAA 6785 | || || | || ||||| ||| | |||||| ||| ||| ||||||| | || || Sbjct 43906 TCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAA 43965 Query 6786 AAAGGATGG 6794 ||||| ||| Sbjct 43966 AAAGGTTGG 43974 >seq57646 Length=1202957 Score = 78.8 bits (86), Expect = 7e-11 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6000 GAACACATTGAAAATGGAACATGGCCTACAGCCGCTCAAACACAAGACTTTGGAGACAGG 6059 || |||||| | ||| |||||||| || |||||| | || ||||| ||| | Sbjct 1171420 GACCACATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGA 1171361 Query 6060 TGGAATCAGTTGCCACTGACTAAATGCTTTGAAATACCCGATTTGTTGGATCCCTCTGTA 6119 ||| || | | || | ||||||||||||| ||||||||| | | ||||| | || Sbjct 1171360 TGGCATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTA 1171301 Query 6120 ATATATTCAGATAAGAGTCACTC 6142 || ||||||||||| |||||||| Sbjct 1171300 ATTTATTCAGATAAAAGTCACTC 1171278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35368090890160