Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq40018 158 9e-35 seq28589 95.1 9e-16 >seq40018 Length=56561 Score = 158 bits (174), Expect = 9e-35 Identities = 452/692 (65%), Gaps = 41/692 (6%) Strand=Plus/Plus Query 6038 CACATACTAGAAAACACTTGGCCTACTCCGGCTCAAATACAAGATTTCGGGGATCACTGG 6097 || |||| ||| |||||||||| |||||| ||||| | ||| |||||||| | ||| Sbjct 43188 CATATACGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCGGGGACAAGTGG 43247 Query 6098 CATGAACTTCCTCTAATACAGTGCTTCGACATACCAGATCTGATAGACCCATCCATCATC 6157 || || || || | | || ||||| ||||| ||| ||||||| |||||| || Sbjct 43248 CACATGCTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATGCATCCACTATA 43307 Query 6158 TACT---CCGATAAAAGTCACTCTATGAACCGAGCTGAGGTTCTTAACCACGTAAGAAAG 6214 | | | ||||| | |||||| ||||| || | | | | ||||||| Sbjct 43308 TTATATGCGGATAAGAATCACTCCATGAATCGTAGTACCATATTGGATTTGGTAAGAA-- 43365 Query 6215 CATCCGAACAAGATCATACCTACCAAGAAAGTGTTGAAAACTATGTTGGAAAAACCAGCA 6274 | || |||| | | |||| || || || |||||| | | | | | || || Sbjct 43366 ----CAAAAAAGAA---AGGT-CCAATAACGTCTTAAAAACTTT-TAGATACATTCATCA 43416 Query 6275 -----------ACTAACTGGCTGGAGTTTCTAGATGAGATCGACAGAAATGGACTAGGAG 6323 || || ||| |||| || | ||| || || |||||| || | Sbjct 43417 CTAGTCGTGTTACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAATGGATTATCAC 43476 Query 6324 AGGACGACCTTGTGATTGGACTTAAAGGGAAAGAGAGAGAATTAAAATTGATTGGGCGTT 6383 || ||||| ||||| || | || || ||||| ||||| |||||| |||||| || | Sbjct 43477 TAGAGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAAGGATTGGTCGAT 43536 Query 6384 TCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATTA 6443 | || | || | || |||||||| || || || |||||| |||| |||| Sbjct 43537 TTTT----CACAAGC--------TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTA 43584 Query 6444 AGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTGA 6503 | || |||| ||| | ||||| | || || || |||||||||||||| || || ||| Sbjct 43585 AAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGA 43644 Query 6504 TCAAGAAGATGATGGACAGTTCCTCGGGGCAGGGGTTGACAGATTA--CTCA--GCTGTA 6559 | ||||||||| || | |||| |||| | | |||| ||| | ||| Sbjct 43645 CAACAAAGATGATGAACTACACAACGGGACAGGATCTAAATAATTATGATCATGTCAGTA 43704 Query 6560 TGCATAGCCAATCATATCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAAT 6619 ||||| |||| || ||||| || |||||||||||| | || ||| | ||||||| Sbjct 43705 GATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAAC 43764 Query 6620 GGGCCGGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACG 6679 | | | | ||||| |||||| | |||||||| | || ||| | || || || Sbjct 43765 AGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACA 43824 Query 6680 CACGAATTCTTTGAGAAAAGTTTGGTTTATTA 6711 ||||||||||||||||| |||||| |||| || Sbjct 43825 CACGAATTCTTTGAGAAGAGTTTGATTTACTA 43856 >seq28589 Length=6593 Score = 95.1 bits (104), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 7034 AAGTTAGGACTTGTGATCAACCAAGATGAGACCATGCAATCCGCCGATTATTTGAATTAT 7093 || ||||| ||| | |||||| |||||| || |||| ||| || |||| ||| |||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 7094 GGGAAGATTCCGATTTTCCGTGGAACAATTCGTGGACTCGAATTCAAAAGATGGTCTAGA 7153 ||||| | || | || || |||| ||| | ||| | || ||||||||||| || Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277 Query 7154 GTGACATGTGTGACCAATGATCAGCTGCCTACGTGTGCCAACCTCATGTCGTCAGTGTCC 7213 || || || ||| |||||||||| ||||| | | || || ||||| | || || Sbjct 2278 GTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCT 2337 Query 7214 ACCAATGCTTTGACAGTAGCTCAC 7237 | ||||| |||||||| ||||| Sbjct 2338 TCAAATGCCTTGACAGT--CTCAC 2359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35707061743176