Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_025392.1
Length=11121
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 111 1e-20
seq40018 109 4e-20
seq28589 107 1e-19
>seq57646
Length=1202957
Score = 111 bits (122), Expect = 1e-20
Identities = 292/439 (67%), Gaps = 10/439 (2%)
Strand=Plus/Minus
Query 6010 GATTTTGGTGACAAATGGCATGAATTACCTTTAGTGCAATGCTTCGATATTCCGGATTTG 6069
|||||||||||| |||||||||| |||| ||| ||||||| || || || ||| |
Sbjct 1171375 GATTTTGGTGACCGATGGCATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTA 1171316
Query 6070 ATCGATCCTTCCATCATTTATTCGGACAAAAGTCACTCTATGAACAAGAGAGAGGTGATG 6129
|| |||||| | |||||||| || |||||||||||| | ||| | | |
Sbjct 1171315 ATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAG 1171256
Query 6130 AATCACATTAAATCCAAGTCTGACCA-ACCCAT-TCCCAGCAAAAAAGTT-CTTAAGACT 6186
| || || | |||||| | | || | | ||||| | | ||| | || |||||
Sbjct 1171255 GAGCATATCTTA---AAGTCTCCCAATACACCTGTCCCATCTCATAAGGTACTCAAGACA 1171199
Query 6187 ATGATAGAAGAACCCGCTACCAACTGGTTGGAATTCCTGGAAATGATCGACAAACATGGA 6246
| | || | || || || ||| ||||||||| | | ||| | | ||||
Sbjct 1171198 TTCCTTCAAACAGAAGCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGA 1171139
Query 6247 CTGGATGATGATGATTTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAA--GATTG 6304
| || || |||| | || || || | ||| ||||| |||||| | || ||||
Sbjct 1171138 TTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATT- 1171080
Query 6305 CAGGTAGATTCTTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAAT 6364
|||||||||||| || ||||| ||||| || | | || || ||||| ||||| || |
Sbjct 1171079 -AGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGT 1171021
Query 6365 ATCTGATCAAAACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGA 6424
|||| || |||| || | | | || || |||| || | || ||||| |||||| | |
Sbjct 1171020 ATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAA 1170961
Query 6425 CTTCAGTCATCAAGAAAAT 6443
|||||| || || || ||
Sbjct 1170960 ATTCAGTTATGAAAAAGAT 1170942
>seq40018
Length=56561
Score = 109 bits (120), Expect = 4e-20
Identities = 230/334 (69%), Gaps = 8/334 (2%)
Strand=Plus/Plus
Query 6341 GAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTCCCTCTCTTTTATG 6400
||||||||||||| || ||||| || ||||| ||||| || | ||| | || || | |
Sbjct 43552 GAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAAG 43611
Query 6401 GACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAA-ATGCTAGAAAGTTCATCC 6459
| ||||| ||||| |||||| | || || | | ||| ||| ||| | | || |
Sbjct 43612 GTCTCACTATGGCAGATGATCTAACCACACTGA-CAACAAAGATGATGAACTACACAACG 43670
Query 6460 GGTCAAGGGTTGAATGACTAT--TC-TG-CAATCTCAATCGCAAATCACATAGATTATGA 6515
|| || | | ||| | ||| || || || | || ||||||| ||||| || ||
Sbjct 43671 GGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGA 43730
Query 6516 GAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTG-TATTCAAAGTGATGGGAC 6574
||||||||||||| | || || ||| ||| ||| | ||| | ||| || ||| |
Sbjct 43731 GAAATGGAACAATAATCAAAGGAGACAATCCAAC-AGTCTGATCTTCCGTGTAATGAGTG 43789
Query 6575 AATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAAGAGTTTGA 6634
|| |||| | ||| ||||| || | || || ||||||||||||||||||||||
Sbjct 43790 CGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGA 43849
Query 6635 TTTATTATAATGGAAGACCCGATTTGATGAGAGT 6668
|||| ||| | | ||| ||| ||||||| ||
Sbjct 43850 TTTACTATGCCGATAAACCTGATCTGATGAGGGT 43883
>seq28589
Length=6593
Score = 107 bits (118), Expect = 1e-19
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 6970 GGGCTTTTAATCAATCAAGATGAAACAATGCAATCGGCTGATTATCTTAATTACGGTAAA 7029
|| ||| ||||||| ||||||||| |||| ||| || |||| || | ||| || |||
Sbjct 2164 GGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAA 2223
Query 7030 GTTCCAATCTTCCGAGGGGTCATACGAGGACTAGAGACTAAAAGATGGTCCAGGGTGACC 7089
|| || | || ||||| ||| | ||| ||||||||||||||||||| | || ||
Sbjct 2224 GTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACT 2283
Query 7090 TGCGTCACCAATGATCAACTGCCTACTTGTGCTAATTTGCTGTCATCTGTCTCAACTAAT 7149
||||| |||||||||||||||| | | ||| | |||| |||| || | |||
Sbjct 2284 TGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAAT 2343
Query 7150 GCATTGACTGTGTCCCA 7166
|| ||||| || || ||
Sbjct 2344 GCCTTGACAGTCTCACA 2360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35448036846060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |