Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq57646 111 1e-20 seq40018 109 4e-20 seq28589 107 1e-19 >seq57646 Length=1202957 Score = 111 bits (122), Expect = 1e-20 Identities = 292/439 (67%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 6010 GATTTTGGTGACAAATGGCATGAATTACCTTTAGTGCAATGCTTCGATATTCCGGATTTG 6069 |||||||||||| |||||||||| |||| ||| ||||||| || || || ||| | Sbjct 1171375 GATTTTGGTGACCGATGGCATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTA 1171316 Query 6070 ATCGATCCTTCCATCATTTATTCGGACAAAAGTCACTCTATGAACAAGAGAGAGGTGATG 6129 || |||||| | |||||||| || |||||||||||| | ||| | | | Sbjct 1171315 ATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAG 1171256 Query 6130 AATCACATTAAATCCAAGTCTGACCA-ACCCAT-TCCCAGCAAAAAAGTT-CTTAAGACT 6186 | || || | |||||| | | || | | ||||| | | ||| | || ||||| Sbjct 1171255 GAGCATATCTTA---AAGTCTCCCAATACACCTGTCCCATCTCATAAGGTACTCAAGACA 1171199 Query 6187 ATGATAGAAGAACCCGCTACCAACTGGTTGGAATTCCTGGAAATGATCGACAAACATGGA 6246 | | || | || || || ||| ||||||||| | | ||| | | |||| Sbjct 1171198 TTCCTTCAAACAGAAGCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGA 1171139 Query 6247 CTGGATGATGATGATTTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAA--GATTG 6304 | || || |||| | || || || | ||| ||||| |||||| | || |||| Sbjct 1171138 TTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATT- 1171080 Query 6305 CAGGTAGATTCTTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAAT 6364 |||||||||||| || ||||| ||||| || | | || || ||||| ||||| || | Sbjct 1171079 -AGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGT 1171021 Query 6365 ATCTGATCAAAACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGA 6424 |||| || |||| || | | | || || |||| || | || ||||| |||||| | | Sbjct 1171020 ATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAA 1170961 Query 6425 CTTCAGTCATCAAGAAAAT 6443 |||||| || || || || Sbjct 1170960 ATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 109 bits (120), Expect = 4e-20 Identities = 230/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 6341 GAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTCCCTCTCTTTTATG 6400 ||||||||||||| || ||||| || ||||| ||||| || | ||| | || || | | Sbjct 43552 GAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAAG 43611 Query 6401 GACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAA-ATGCTAGAAAGTTCATCC 6459 | ||||| ||||| |||||| | || || | | ||| ||| ||| | | || | Sbjct 43612 GTCTCACTATGGCAGATGATCTAACCACACTGA-CAACAAAGATGATGAACTACACAACG 43670 Query 6460 GGTCAAGGGTTGAATGACTAT--TC-TG-CAATCTCAATCGCAAATCACATAGATTATGA 6515 || || | | ||| | ||| || || || | || ||||||| ||||| || || Sbjct 43671 GGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGA 43730 Query 6516 GAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTG-TATTCAAAGTGATGGGAC 6574 ||||||||||||| | || || ||| ||| ||| | ||| | ||| || ||| | Sbjct 43731 GAAATGGAACAATAATCAAAGGAGACAATCCAAC-AGTCTGATCTTCCGTGTAATGAGTG 43789 Query 6575 AATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAAGAGTTTGA 6634 || |||| | ||| ||||| || | || || |||||||||||||||||||||| Sbjct 43790 CGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGA 43849 Query 6635 TTTATTATAATGGAAGACCCGATTTGATGAGAGT 6668 |||| ||| | | ||| ||| ||||||| || Sbjct 43850 TTTACTATGCCGATAAACCTGATCTGATGAGGGT 43883 >seq28589 Length=6593 Score = 107 bits (118), Expect = 1e-19 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 6970 GGGCTTTTAATCAATCAAGATGAAACAATGCAATCGGCTGATTATCTTAATTACGGTAAA 7029 || ||| ||||||| ||||||||| |||| ||| || |||| || | ||| || ||| Sbjct 2164 GGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAA 2223 Query 7030 GTTCCAATCTTCCGAGGGGTCATACGAGGACTAGAGACTAAAAGATGGTCCAGGGTGACC 7089 || || | || ||||| ||| | ||| ||||||||||||||||||| | || || Sbjct 2224 GTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACT 2283 Query 7090 TGCGTCACCAATGATCAACTGCCTACTTGTGCTAATTTGCTGTCATCTGTCTCAACTAAT 7149 ||||| |||||||||||||||| | | ||| | |||| |||| || | ||| Sbjct 2284 TGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAAT 2343 Query 7150 GCATTGACTGTGTCCCA 7166 || ||||| || || || Sbjct 2344 GCCTTGACAGTCTCACA 2360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35448036846060