Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_025394.1
Length=11103
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 140 2e-29
seq28589 111 1e-20
seq57646 86.0 4e-13
>seq40018
Length=56561
Score = 140 bits (154), Expect = 2e-29
Identities = 294/434 (68%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 6330 AGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACACTTTGTTCCGTTA 6389
|| ||| | ||||| |||||||| || ||||| ||||||||||||||| ||| | |
Sbjct 43545 AGCTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTG 43604
Query 6390 TTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaTGATGGAGAGT 6449
|| | || | ||||||||||||||| | || | ||| | ||| |||||| |
Sbjct 43605 TTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTAC 43664
Query 6450 TCATCAGGTCAGGGTCTCAACGATTATTCT----TCAATATGTCTGGCTAATCACATTGA 6505
|| | || |||| ||| || ||||| | ||| || | | || |||| || ||
Sbjct 43665 ACAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGA 43724
Query 6506 TTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTTCCGTGTCAT 6565
|| ||||||||||||||| |||| || | | | || || | | | |||||||| ||
Sbjct 43725 CTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAAT 43784
Query 6566 GGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCTTTGAAAAAAG 6625
| || ||||||||| | ||| || | || ||||| || ||||||||||| || ||
Sbjct 43785 GAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAG 43844
Query 6626 TCTGATATATTACAATGGGAGACCAGATTTGATGAAAGTGCAAG--GAAATTCATTAGTC 6683
| |||| || || | | ||| ||| |||||| || ||| || || | || ||
Sbjct 43845 TTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGC--TATTC 43902
Query 6684 AA--TAACAGCAATCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGGAGGGCTTGA 6741
|| ||| | || | ||| || ||||| ||||| ||| |||||||| || | |
Sbjct 43903 AACTCAACTG--ATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAA 43960
Query 6742 GGCAAAAGGGATGG 6755
| |||| || |||
Sbjct 43961 GATAAAAAGGTTGG 43974
>seq28589
Length=6593
Score = 111 bits (122), Expect = 1e-20
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 6918 AATAACGATTTCATCATGGAGGCAATTGAACACGGAACTGGAAAATTAGGACTCTTGATA 6977
|||||| ||| |||||| | | ||| ||| | || | | |||||||| || | ||
Sbjct 2116 AATAACAATTCAATCATGAATGAAATCGAAGAGAGAGCGAGGAAATTAGGTCTTATAATC 2175
Query 6978 AACCAGGACGAGACTATGCAATCAGCTGATTATTTGAATTATGGGAAAGTTCCCATTTTC 7037
||| || || ||||||| ||| || |||| ||| |||||||||||| || | ||
Sbjct 2176 AACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTT 2235
Query 7038 AGAGGTGTCATTAGAGGGTTAGAAACTAAAAGATGGTCTCGGGTAACATGTGTGACAAAT 7097
|||| |||||| || ||||| |||||||||||||| || || || || ||| | |||
Sbjct 2236 CGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAAT 2295
Query 7098 GATCAGTTGCC 7108
||||| ||||
Sbjct 2296 GATCAACTGCC 2306
>seq57646
Length=1202957
Score = 86.0 bits (94), Expect = 4e-13
Identities = 164/242 (68%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 6198 GCAACAAATTGGATTGAATTCTTGGACATGGTCGATAAAGAAGGATTGCCGGAAGATGAT 6257
|| |||||||||| |||||| | | | | | || | ||||| | ||| ||
Sbjct 1171183 GCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCAT 1171124
Query 6258 CTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTCG 6317
| || || || || | |||||| ||||| || | || | |||| ||||||| ||
Sbjct 1171123 TTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCT 1171064
Query 6318 TTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACAC 6377
| ||| | ||| | | |||| ||||||||||| || |||||| | ||||||| |||
Sbjct 1171063 CTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCAC 1171004
Query 6378 TTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaa 6437
| | |||| ||||| || || |||||||| |||||| | | | || || |||||
Sbjct 1171003 TATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAG 1170944
Query 6438 aT 6439
||
Sbjct 1170943 AT 1170942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35390475757812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |