Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq40018 140 2e-29 seq28589 111 1e-20 seq57646 86.0 4e-13 >seq40018 Length=56561 Score = 140 bits (154), Expect = 2e-29 Identities = 294/434 (68%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 6330 AGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACACTTTGTTCCGTTA 6389 || ||| | ||||| |||||||| || ||||| ||||||||||||||| ||| | | Sbjct 43545 AGCTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTG 43604 Query 6390 TTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaTGATGGAGAGT 6449 || | || | ||||||||||||||| | || | ||| | ||| |||||| | Sbjct 43605 TTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTAC 43664 Query 6450 TCATCAGGTCAGGGTCTCAACGATTATTCT----TCAATATGTCTGGCTAATCACATTGA 6505 || | || |||| ||| || ||||| | ||| || | | || |||| || || Sbjct 43665 ACAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGA 43724 Query 6506 TTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTTCCGTGTCAT 6565 || ||||||||||||||| |||| || | | | || || | | | |||||||| || Sbjct 43725 CTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAAT 43784 Query 6566 GGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCTTTGAAAAAAG 6625 | || ||||||||| | ||| || | || ||||| || ||||||||||| || || Sbjct 43785 GAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAG 43844 Query 6626 TCTGATATATTACAATGGGAGACCAGATTTGATGAAAGTGCAAG--GAAATTCATTAGTC 6683 | |||| || || | | ||| ||| |||||| || ||| || || | || || Sbjct 43845 TTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGC--TATTC 43902 Query 6684 AA--TAACAGCAATCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGGAGGGCTTGA 6741 || ||| | || | ||| || ||||| ||||| ||| |||||||| || | | Sbjct 43903 AACTCAACTG--ATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAA 43960 Query 6742 GGCAAAAGGGATGG 6755 | |||| || ||| Sbjct 43961 GATAAAAAGGTTGG 43974 >seq28589 Length=6593 Score = 111 bits (122), Expect = 1e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 6918 AATAACGATTTCATCATGGAGGCAATTGAACACGGAACTGGAAAATTAGGACTCTTGATA 6977 |||||| ||| |||||| | | ||| ||| | || | | |||||||| || | || Sbjct 2116 AATAACAATTCAATCATGAATGAAATCGAAGAGAGAGCGAGGAAATTAGGTCTTATAATC 2175 Query 6978 AACCAGGACGAGACTATGCAATCAGCTGATTATTTGAATTATGGGAAAGTTCCCATTTTC 7037 ||| || || ||||||| ||| || |||| ||| |||||||||||| || | || Sbjct 2176 AACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTT 2235 Query 7038 AGAGGTGTCATTAGAGGGTTAGAAACTAAAAGATGGTCTCGGGTAACATGTGTGACAAAT 7097 |||| |||||| || ||||| |||||||||||||| || || || || ||| | ||| Sbjct 2236 CGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAAT 2295 Query 7098 GATCAGTTGCC 7108 ||||| |||| Sbjct 2296 GATCAACTGCC 2306 >seq57646 Length=1202957 Score = 86.0 bits (94), Expect = 4e-13 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 6198 GCAACAAATTGGATTGAATTCTTGGACATGGTCGATAAAGAAGGATTGCCGGAAGATGAT 6257 || |||||||||| |||||| | | | | | || | ||||| | ||| || Sbjct 1171183 GCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCAT 1171124 Query 6258 CTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTCG 6317 | || || || || | |||||| ||||| || | || | |||| ||||||| || Sbjct 1171123 TTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCT 1171064 Query 6318 TTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACAC 6377 | ||| | ||| | | |||| ||||||||||| || |||||| | ||||||| ||| Sbjct 1171063 CTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCAC 1171004 Query 6378 TTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaa 6437 | | |||| ||||| || || |||||||| |||||| | | | || || ||||| Sbjct 1171003 TATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAG 1170944 Query 6438 aT 6439 || Sbjct 1170943 AT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35390475757812