Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025396.1 Length=15442 Score E Sequences producing significant alignments: (Bits) Value seq57646 116 4e-22 seq40018 105 7e-19 >seq57646 Length=1202957 Score = 116 bits (128), Expect = 4e-22 Identities = 357/540 (66%), Gaps = 14/540 (3%) Strand=Plus/Minus Query 10227 AAGAAAAAATGGCCAGTCAAAAAAGATCAAGTAAATCCAAAACA-CAAGT--TTTATAAT 10283 |||||||||||| ||||| | | || ||| ||||| | | || || | ||| | Sbjct 1171474 AAGAAAAAATGGTTTGTCAATATCG--CAGGTAT-TCCAAGAGATCATGTACTCTATGAC 1171418 Query 10284 CACATTAAACATAACACATGGCCGACCCAGCAACTAATTGAAGAATTCGGTGACCATTGG 10343 |||||||| |||| |||||||| || || | ||| | || || ||||||| ||| Sbjct 1171417 CACATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGG 1171358 Query 10344 CATGAACTTCCCTTAGACAAGTGCTTTGATATTCCTGATATGATTGATATCAGTATATTG 10403 |||||||| || ||| || |||||||| || || ||| | || ||| ||| || | Sbjct 1171357 CATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATT 1171298 Query 10404 TACTCTGATAAAAGTCACTCTTTAGAC-CGATCTGAAGTCTTGAAGGTTATC--AAAGAG 10460 || || |||||||||||||| ||| || || ||| | | || |||| |||| Sbjct 1171297 TATTCAGATAAAAGTCACTC-TTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTC 1171239 Query 10461 GGAAATCACAGAAGGATTCCAACCAAGAGAGTTCTCCAAAGCTTACTAGATCGGCCTGCA 10520 | ||| | | ||| | | | || ||| | | || || | || Sbjct 1171238 TCCCAATACACCTG--TCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCC 1171181 Query 10521 ACAAATTGGCCAGAATTTTTACAAAAAG-TGAATGATCATGGATTAGATTGGGAGAAGTT 10579 ||||||||| ||||| | ||| ||| | |||||| ||||||||| | ||| | || Sbjct 1171180 ACAAATTGGAAGGAATTCCT-CAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTT 1171122 Query 10580 GGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTTTTCTCTTT 10639 || |||||| ||| || || |||||||| | ||| | |||||| || |||||| | Sbjct 1171121 AGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCT 1171062 Query 10640 AATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAATATTA 10699 |||| | | | || || |||||||| ||| || || | ||||| | | || Sbjct 1171061 GATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTA 1171002 Query 10700 TGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAAAGAT 10759 | | ||| | ||| ||| | || ||||| |||||||| || | || || |||||||| Sbjct 1171001 TATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 105 bits (116), Expect = 7e-19 Identities = 214/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 10653 TTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAATATTATGTACCATTGTTT 10712 |||||||| || ||||| || || ||| ||||||| | | | |||||| | |||| Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 10713 GAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAAAGATGCTGGACGTGTCA 10772 |||| || || |||||||||||| | | ||| | | | ||||||| || || || Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667 Query 10773 TCCGGTCAAGGAAC-AAGAAACTATGATTAT----GTATCCATAGCCAACAACATTGATT 10827 | || | |||| | || || |||||| || ||| ||||| || || || | Sbjct 43668 ACGGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACT 43726 Query 10828 ATGAGAAATGGAATAATTATCAAAGGAAAGAATCAAATGGACCGGTATTCAGAGTAATGG 10887 | ||||||||||| ||| ||||||||| | |||| || | | | | ||| | |||||| Sbjct 43727 AGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGA 43786 Query 10888 GACAATTCCTTGGAATG-GAAAATCTTATAGTTCGGACACATGAATTCTTTGAAAATAGT 10946 | || ||||| || ||| | || | ||||||| ||||||||||| || ||| Sbjct 43787 GTGCGTT-CTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 10947 TTGGTCTATTAT 10958 ||| | || ||| Sbjct 43846 TTGATTTACTAT 43857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49261772970735