Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025400.1 Length=15444 Score E Sequences producing significant alignments: (Bits) Value seq57646 100 3e-17 seq40018 100 3e-17 >seq57646 Length=1202957 Score = 100 bits (110), Expect = 3e-17 Identities = 349/539 (65%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 10229 AAGAAAAAATGGCCAGTTAAAAAAGAACAAGTAAATCCAAGACATAA-GT--TTTATAAT 10285 |||||||||||| || || | | || ||| ||||||| || | || | ||| | Sbjct 1171474 AAGAAAAAATGGTTTGTCAATATCG--CAGGTAT-TCCAAGAGATCATGTACTCTATGAC 1171418 Query 10286 CACATAAAACATAACACATGGCCTACCCAGCAACTAATTGAAGAATTTGGTGACCATTGG 10345 ||||| || |||| |||||||| || || | ||| | || |||||||||| ||| Sbjct 1171417 CACATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGG 1171358 Query 10346 CATGAGCTTCCCTTAGACAAGTGTTTTGATATTCCTGATATGATTGATATTAGCATATTG 10405 ||||| || || ||| || || ||||| || || ||| | || ||| ||| || | Sbjct 1171357 CATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATT 1171298 Query 10406 TATGCTGACAAAAGTCACTCTTTGGACCGGTCTGAAGTACTAAAGG---TTATCAGGGAG 10462 ||| | || ||||||||||||| | | | || | |||||| |||| || Sbjct 1171297 TATTCAGATAAAAGTCACTCTT---ATACTTTTTCAGAATTAAAGGAGCATATCTTAAAG 1171241 Query 10463 GGTAATCACAGACGGATTCCAACCAAGAGAGTTCTTCAAAGTTTATTGGATCGACCTGCA 10522 | | | || | ||| | | | || || | | || | | | || Sbjct 1171240 TCTCCCAATACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCC 1171181 Query 10523 ACAAATTGGCCAGAATTTTTACAAAGGGTGAATGATCATGGATTAGATTGGGAGAAGTTG 10582 ||||||||| ||||| | | | | | |||||| ||||||||| | ||| | || Sbjct 1171180 ACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTA 1171121 Query 10583 GTGATAGGTTTAAAAGCCAAAGAAAGGGAGCTTAAAGAAGAAGGCAGGTTTTTCTCTTTA 10642 || |||||| ||| || |||||||| || | ||| | ||| || || |||||| | Sbjct 1171120 GTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTG 1171061 Query 10643 ATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATCAAAAAATATTAT 10702 |||| | | | || || |||||||| ||| || || | || |||| | ||| Sbjct 1171060 ATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTAT 1171001 Query 10703 GTACCATTATTCGAAGGACTTACAATGGCGGATGATTTGAATACAGTCATCAAAAAGAT 10761 | ||| |||| ||| | || ||||| |||||||| ||| |||| || |||||||| Sbjct 1171000 ATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 100 bits (110), Expect = 3e-17 Identities = 286/430 (67%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 10655 TTAAGAGACTACTTTGTTGCAACTGAATACTTGATCAAAAAATATTATGTACCATTATTC 10714 |||||||| || ||||| || || ||| |||| |||| | | |||||| | | || Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 10715 GAAGGACTTACAATGGCGGATGATTTGAATACAGTCATCAAAAAGATGCTGGATGTGTCC 10774 |||| || || ||||| |||||| | | ||| | | | ||||||| || | | Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667 Query 10775 TCCGGCCAAGGAACAAGA-AACTATGATTATGT--GTCAATA--GCTAACAATATTGATT 10829 | || || ||| | | | || |||||| |||| || ||| || || || || | Sbjct 43668 ACGGGACA-GGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACT 43726 Query 10830 ATGAAAAATGGAATAATTATCAAAGAAAAGAATCAAATGGACCAGTATTCAGAGTAATGG 10889 | || |||||||| ||| ||||||| | | |||| || | | | ||| | |||||| Sbjct 43727 AGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGA 43786 Query 10890 GGCAATTCCTTGGAATGGAA-AATTTGATAGTTCGGACACATGAATTCTTTGAAAATAGT 10948 | ||| |||| || ||||| || | ||||||| ||||||||||| || ||| Sbjct 43787 GTGCGTTC-TTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 10949 TTGGTTTATTATAACCAGCGAGCAGATTTAATGATGGTACAAGGAAGAAATTGT-TTAAA 11007 ||| |||| ||| | | | | ||| | |||| |||| || || || || | || || Sbjct 43846 TTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAA-GATGATATGCTATTCAA 43904 Query 11008 CAGAACAGGAACCAAGGTGTGTTGGGAGGGTCAAAAAGGGGGATTAGAGGGGCTGAGGCA 11067 | ||| | | |||||| ||| | || ||| |||||| || || ||||| || | Sbjct 43905 CTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATA 43964 Query 11068 AAAGGGATGG 11077 ||| || ||| Sbjct 43965 AAAAGGTTGG 43974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49268168527109