Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025401.1 Length=11056 Score E Sequences producing significant alignments: (Bits) Value seq40018 89.7 4e-14 >seq40018 Length=56561 Score = 89.7 bits (98), Expect = 4e-14 Identities = 287/435 (66%), Gaps = 14/435 (3%) Strand=Plus/Plus Query 6339 TTACGAGAGTATTTTGTTATCACAGAGTATTTGATAAAAACACATTTTGTCAAATTGTAT 6398 ||| |||| |||||||| ||||| ||||| |||| |||||||| | ||| ||| Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 6399 GATGGCTTGACCATGGCAGATGATCTTAA-AGACGTGGTTGGAAAACTGTTGAGTCGATC 6457 | || | || |||||||||||||| | | || || ||| || ||| | Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACAC-TGACAACAAAGATGATGAACTACAC 43666 Query 6458 AATGGGTCAGGGGACACCTGATTA----CACCTCTATAACTTTTGCTAATCATATAGATT 6513 || ||| |||| | | |||| || || || | | || |||| ||||| | Sbjct 43667 AACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACT 43726 Query 6514 ACAGCAAATGGAACAACCATCAAAGAAAAGAATCAAATGGCCCTTTATTCCGCGTGATGG 6573 | ||||||||||| ||||||| | | |||| || | | | ||||| || ||| Sbjct 43727 AGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGA 43786 Query 6574 GACAATTCTTAGGGTTTCCCTCTTTAATTGAGAGAACTCACGAGTTTTTTGAAAAAAGTC 6633 | ||||| |||| ||| |||||||||||| || ||||| || ||||| || ||| Sbjct 43787 GTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTT 43846 Query 6634 TAATTTACTACGCAG-GGGACTTGAGTCTGTTGAGATTAGAAAAGGGTAATGTTGTTC-C 6691 | |||||||| || | || ||| |||| |||| ||||| | | | ||| | ||| Sbjct 43847 TGATTTACTATGCCGATAAACCTGA-TCTGATGAGGGTAGAAGATGAT-ATGCTATTCAA 43904 Query 6692 TTCTACTAGCATCAGGTCTTGT--TGGCAAGGTCAACCAGGGGGTCTTGAGGGATTGCGT 6749 || ||| || | | ||| ||| | || |||| ||||||| | || || | | Sbjct 43905 CTCAACT--GATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGA 43962 Query 6750 CAAAAAGGGTGGTCT 6764 ||||||| |||||| Sbjct 43963 TAAAAAGGTTGGTCT 43977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35240177360720