Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq40018 174 1e-39 seq28589 140 2e-29 seq57646 102 6e-18 >seq40018 Length=56561 Score = 174 bits (192), Expect = 1e-39 Identities = 354/515 (69%), Gaps = 28/515 (5%) Strand=Plus/Plus Query 6300 AGAGGCTTTAGTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCA--GGTAGA 6357 ||||| |||| || |||| || ||||| ||||||||| | ||| || | ||| || Sbjct 43478 AGAGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAA--AGGATTGGTCGA 43535 Query 6358 TTCTTTTCATTGATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAAT- 6416 || ||||| || | ||| |||| || ||||| || ||||| || | || Sbjct 43536 TT--TTTCA-------CAAGC---TTAAGAGAATATTTTGTAATCACCGAGTACCTGATT 43583 Query 6417 AAAACACCATTTTGTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGT 6476 ||||||| | | |||| | || || || || | || |||||||||||| | || | | Sbjct 43584 AAAACAC-ACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACACT 43642 Query 6477 GATCAAAAAGATGCTGGAAAGAAGTCAAGGCCA-AGGAG--AATTAGACTATCAACATGT 6533 || | ||||||| || || | ||| | | |||| || || | ||| | ||||| Sbjct 43643 GACAACAAAGATGATG--AACTACACAACGGGACAGGATCTAAATA-ATTATGATCATGT 43699 Query 6534 GAGCA----TAGCGAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAAT 6589 || | |||| || | ||||| || || || ||||||||| ||||||||| | ||| Sbjct 43700 CAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAAT 43759 Query 6590 CAAATGGACCAGTTTTCCGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGA 6649 | || | | | |||||||| ||| | |||||||| | ||| ||| || |||| Sbjct 43760 CCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGA 43819 Query 6650 GAACGCATGAGTTCTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGA 6709 | || || || ||||||||||| ||| | |||| || | || ||| || |||||| Sbjct 43820 GGACACACGAATTCTTTGAGAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGATGA 43879 Query 6710 AGGTAGAAAATGGTGTAGTATTGAATAAAACAGATAATTTAGTTTGCTGGAATGGTCAAG 6769 ||||||| ||| | | |||| || ||| |||| || || ||||||||||| ||| Sbjct 43880 GGGTAGAAGATGATATGCTATTCAACTCAACTGATAGGTTGGTGTGCTGGAATGGACAAC 43939 Query 6770 CAGGGGGGTTAGAGGGACTGAGACAAAAAGGTTGG 6804 |||||| || || || || ||| ||||||||||| Sbjct 43940 GAGGGGGTTTGGAAGGGCTAAGATAAAAAGGTTGG 43974 >seq28589 Length=6593 Score = 140 bits (154), Expect = 2e-29 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 7001 GAGTGAATAAACTAGGTCTGATCATCAATAATGATGAAACAATACAAAGTGCAGATTTCC 7060 ||| || ||| ||||||| || ||||| | |||||||| || | | ||||||||||| Sbjct 2150 GAGCGAGGAAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCC 2209 Query 7061 TTACATATGGGAAAGTCCCAATTTTCAGGGGTAACATAAGAGGTTTAGAGACAAAAAGGT 7120 | | |||||||||||||| | || | || ||||| || || |||||||| ||||| | Sbjct 2210 TGAGTTATGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGAT 2269 Query 7121 GGTCTCGGGTGACTTGTGTCACAAATGATCAATTGCCATCTTTGGCCAATGTCTTATCTT 7180 |||| || || ||||| || | ||||||||| |||| || | ||| |||| || Sbjct 2270 GGTCACGAGTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGA 2329 Query 7181 CTGTCTCAACTAATGCGTTGACAGTCTCTCATTAC 7215 |||| || | ||||| ||||||||||| || ||| Sbjct 2330 CTGTATCTTCAAATGCCTTGACAGTCTCACACTAC 2364 >seq57646 Length=1202957 Score = 102 bits (112), Expect = 6e-18 Identities = 319/485 (66%), Gaps = 12/485 (2%) Strand=Plus/Minus Query 6010 GAACATATAATGAATTCAACATGGCCTACTCCAAAACAGATAGAAGACTTCGGAGACCAT 6069 || || || | |||| |||||||| |||| || |||| || || || |||| Sbjct 1171420 GACCACATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGA 1171361 Query 6070 TGGCATGAATTGCCACTTTCCAAGATATACGAGATACCTGATTTAATAGATCCCTCTGTG 6129 ||||||||| | || | || || | |||||||| ||| |||||||||| | | Sbjct 1171360 TGGCATGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTA 1171301 Query 6130 ATTTACTCTGACAAGAGTCATTCCATGAATCGAAGTGAGA-TTATACAA-CACATATTGG 6187 ||||| || || || ||||| || | | | | ||| ||| | | || || || Sbjct 1171300 ATTTATTCAGATAAAAGTCACTC--TTATACTTTTTCAGAATTAAAGGAGCATATCTTAA 1171243 Query 6188 AG-CACCCTCTAAAGCCGATCCCTACAAGAAAAGTACTAAGAACATTATTGGAAAAACCA 6246 || | ||| || | | | |||| | || ||||| | ||||| | ||| | | Sbjct 1171242 AGTCTCCCAATACACCTG-TCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAA 1171184 Query 6247 GCTACAGACTGGCCATCATTCTTGAAAAGGATAGATGAAGAAGGTCTAAATGAAGAGGCT 6306 || ||| | ||| |||| | || | |||| |||| || || | |||| | Sbjct 1171183 GCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCAT 1171124 Query 6307 TTAGTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCA 6366 ||||| ||||| ||| ||| || |||||||| | ||| | |||||||||||| || Sbjct 1171123 TTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCT 1171064 Query 6367 TTGATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATAT-TTAATAAAA--CAC 6423 ||||| ||||| | | | || |||||||| || || || ||| ||| ||||| ||| Sbjct 1171063 CTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCAC 1171004 Query 6424 CATTTTGTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAA 6483 || || || |||||| || ||||| ||||| |||||| | | ||| || ||| Sbjct 1171003 TATATT---CCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAA 1170947 Query 6484 AAGAT 6488 ||||| Sbjct 1170946 AAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35511993610780