Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq28589 80.6 2e-11 >seq28589 Length=6593 Score = 80.6 bits (88), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 7890 AAATTGGGTCTTATAATAAACAAAGATGAAACTGTACAGGCAGCAGATTACATGAATTAC 7949 ||||| ||||||||||| |||| |||||||||| | | | ||||||| | ||| ||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 7950 GGGAAAGTTCCAATTTACAGAGGAGTTATTAGAGGTTT---GACTGGTAAAAGATGGTCA 8006 |||||||| || | | ||||| ||||| || || ||| ||||||||||||| Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGAC---TAAAAGATGGTCA 2274 Query 8007 AGAGCAAACTTTGTTACAAACGATCAGCTTCCCTCATTATCCAATGTAATAAGCTCAGTA 8066 ||| | | || | || ||||| || ||| |||| ||| | | | ||| Sbjct 2275 CGAGTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTA 2334 Query 8067 TCAACAAACGCATTGACAGTTTGTCACTTTTCGAAA 8102 || |||| || |||||||| | |||| ||| || Sbjct 2335 TCTTCAAATGCCTTGACAGTCTCACACTACTCGGAA 2370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38322893420224