Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028232.1 Length=11214 Score E Sequences producing significant alignments: (Bits) Value seq40018 104 2e-18 seq57646 87.8 1e-13 seq28589 82.4 5e-12 >seq40018 Length=56561 Score = 104 bits (114), Expect = 2e-18 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 6634 AAGTGGAACAATCATCAAAGAAAAGAATCAAACAAATATG-TCTTCCGAGTGATGGGTCA 6692 || ||||||||| ||||||| | | |||| |||| | || ||||||| || ||| || Sbjct 43732 AAATGGAACAATAATCAAAGGAGACAATCCAACAG-TCTGATCTTCCGTGTAATGAGTGC 43790 Query 6693 GTTCATGGGATATCCGAATTTGTTCGAAAGGACACACGAGTTTTTTGAAAAGAGCTTGAT 6752 |||| |||| | ||||||||| | || ||||||||||| || ||||| ||||| ||||| Sbjct 43791 GTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGAT 43850 Query 6753 TTATTATGC 6761 ||| ||||| Sbjct 43851 TTACTATGC 43859 >seq57646 Length=1202957 Score = 87.8 bits (96), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 6301 ACATTGATTAAAACTGAAGCCACTAACTGGAAAGAGTTTCTGCAAGAA-ATTAATGACAA 6359 ||||| || |||| |||||||| || ||||| || || || |||||| || ||||| Sbjct 1171201 ACATTCCTTCAAACAGAAGCCACAAATTGGAAGGAATTCCT-CAAGAAGATAAATGATTT 1171143 Query 6360 GGGCTTGGAAGAAAAGTGGTTGTTAATTGGACTCAAAGCAAAAGAAAGAGAGCTAAAAAT 6419 || || || | || || | || || || | || ||||||||||| |||||| Sbjct 1171142 TGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAG 1171083 Query 6420 TATCGGGAGGTATTTCGCTCTCTTGTCATGGAAGTTGAGAGAATATTTTGTGATAACAGA 6479 | || || | ||| |||| || ||||| | | || || || ||||| |||||||| Sbjct 1171082 ATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGA 1171023 Query 6480 GTATTTGATCAAGACTAATTTCATT-CACTTGTATGATGGTCTGACAATGGCAGATGATT 6538 |||| | || || | | | | ||| |||| | | | ||| | || ||||| ||||||| Sbjct 1171022 GTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGT-TAACTATGGCCGATGATT 1170964 Query 6539 TAAA 6542 |||| Sbjct 1170963 TAAA 1170960 >seq28589 Length=6593 Score = 82.4 bits (90), Expect = 5e-12 Identities = 173/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 7084 GGGCTGATAATCAACATGGATGAGACGATGGTCTCGACCGAATTTCTGAACTATGGGAAA 7143 || || |||||||||| ||||| || ||| || | || || |||| ||||||||| Sbjct 2164 GGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAA 2223 Query 7144 GTTCCAGTTTATAGAGGAAACATTCTAGGACTAAAGACCAAGAGATGGGCAAGAGTTTCA 7203 || || || | | ||||||||||| ||| || |||| || |||||| || |||| | Sbjct 2224 GTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACT 2283 Query 7204 AGTTACTCAAACGA-CAATTTGCCGAATATTGCAAACATCATGAGTACAGTTTCATCAAC 7262 | || || || ||| | ||| || | | || ||| || || || || |||| Sbjct 2284 TGCGTGTCCAATGATCAACTGCCCGGAT-TAGGGAATATCTTGTCGACTGTATCTTCAAA 2342 Query 7263 AGCCTTGTCAATCTCACATTTTTC-CCAATCGATTTGTGATCCTATTCTAAATTACAATT 7321 |||||| || ||||||| | || || | ||| || || || || | ||||| | Sbjct 2343 TGCCTTGACAGTCTCACACTACTCGGAAAGCCCATTG-AATTCTCTTATACACTACAACT 2401 Query 7322 TCTTCGGGAATTT 7334 |||| |||||||| Sbjct 2402 TCTTGGGGAATTT 2414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35745435802008