Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_028234.1
Length=12162
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 140 3e-29
seq57646 102 6e-18
>seq40018
Length=56561
Score = 140 bits (154), Expect = 3e-29
Identities = 303/448 (68%), Gaps = 24/448 (5%)
Strand=Plus/Plus
Query 7322 ACTAATTGGAAAGAGTTCTTTGAAGAAGTGGATCAAAATGGATTATCTGATGAAGATCTC 7381
|| ||||||| | ||||||| |||| || | | ||||||||||| || || ||
Sbjct 43428 ACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAATGGATTATCACTAGAGGACCTA 43487
Query 7382 TTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTA 7441
|||| |||| |||| ||||||||||| | ||||||| ||| ||||||| |
Sbjct 43488 GTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCACA--- 43544
Query 7442 ATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTT 7501
|| || |||||||| ||||| || || | ||||||||||| ||| | |
Sbjct 43545 ---------AGCTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTAT 43595
Query 7502 GTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaTG 7561
|| | || || | || || ||||||||||||||| | | |||| | | ||| |||
Sbjct 43596 GTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATG 43655
Query 7562 ATTCGAA--ACTCAAATGGACAAGGAT-TAAATGATTA----CAGTAGAATAACTATAGC 7614
|| ||| || ||| |||| ||||| ||||| |||| || | || ||||||
Sbjct 43656 AT--GAACTACACAACGGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGC 43712
Query 7615 AAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAAATATG- 7673
||||| || || || || || ||||| ||| ||||||| | |||| || | | ||
Sbjct 43713 AAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAA-CAGTCTGA 43771
Query 7674 TTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCATGAGT 7733
| || || ||| | ||||| || | ||| |||||||||| || || || || |
Sbjct 43772 TCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAAT 43831
Query 7734 TTTTTGAAAAAAGTGTCATATACTACGC 7761
| ||||| || ||| | || ||||| ||
Sbjct 43832 TCTTTGAGAAGAGTTTGATTTACTATGC 43859
>seq57646
Length=1202957
Score = 102 bits (112), Expect = 6e-18
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 7400 AAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTAATGACTTGGAGATTGAGA 7459
|||||||||||| | ||||| ||||||||| || ||||| ||||| ||| | | ||
Sbjct 1171102 AAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGG 1171043
Query 7460 GAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTTGTCCCTCTATTTGAGGGA 7519
|| |||||||| ||| || | || ||||||| || | | | || |||||| ||
Sbjct 1171042 GATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGG 1170983
Query 7520 CTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaT 7560
|||||||||| |||||||| | ||||| ||||||| ||
Sbjct 1170982 TTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 38776986449736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |