Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq40018 140 3e-29 seq57646 102 6e-18 >seq40018 Length=56561 Score = 140 bits (154), Expect = 3e-29 Identities = 303/448 (68%), Gaps = 24/448 (5%) Strand=Plus/Plus Query 7322 ACTAATTGGAAAGAGTTCTTTGAAGAAGTGGATCAAAATGGATTATCTGATGAAGATCTC 7381 || ||||||| | ||||||| |||| || | | ||||||||||| || || || Sbjct 43428 ACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAATGGATTATCACTAGAGGACCTA 43487 Query 7382 TTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTA 7441 |||| |||| |||| ||||||||||| | ||||||| ||| ||||||| | Sbjct 43488 GTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCACA--- 43544 Query 7442 ATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTT 7501 || || |||||||| ||||| || || | ||||||||||| ||| | | Sbjct 43545 ---------AGCTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTAT 43595 Query 7502 GTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaTG 7561 || | || || | || || ||||||||||||||| | | |||| | | ||| ||| Sbjct 43596 GTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATG 43655 Query 7562 ATTCGAA--ACTCAAATGGACAAGGAT-TAAATGATTA----CAGTAGAATAACTATAGC 7614 || ||| || ||| |||| ||||| ||||| |||| || | || |||||| Sbjct 43656 AT--GAACTACACAACGGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGC 43712 Query 7615 AAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAAATATG- 7673 ||||| || || || || || ||||| ||| ||||||| | |||| || | | || Sbjct 43713 AAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAA-CAGTCTGA 43771 Query 7674 TTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCATGAGT 7733 | || || ||| | ||||| || | ||| |||||||||| || || || || | Sbjct 43772 TCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAAT 43831 Query 7734 TTTTTGAAAAAAGTGTCATATACTACGC 7761 | ||||| || ||| | || ||||| || Sbjct 43832 TCTTTGAGAAGAGTTTGATTTACTATGC 43859 >seq57646 Length=1202957 Score = 102 bits (112), Expect = 6e-18 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 7400 AAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTAATGACTTGGAGATTGAGA 7459 |||||||||||| | ||||| ||||||||| || ||||| ||||| ||| | | || Sbjct 1171102 AAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGG 1171043 Query 7460 GAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTTGTCCCTCTATTTGAGGGA 7519 || |||||||| ||| || | || ||||||| || | | | || |||||| || Sbjct 1171042 GATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGG 1170983 Query 7520 CTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaT 7560 |||||||||| |||||||| | ||||| ||||||| || Sbjct 1170982 TTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38776986449736