Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq28589 93.3 3e-15 seq57646 82.4 6e-12 >seq28589 Length=6593 Score = 93.3 bits (102), Expect = 3e-15 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8955 GATGAAACTATGGTCAGTGCCGATTATTTAAATTATGGGAAAGTTCCTATATTTCGTGGA 9014 |||||||||||| ||| |||| | | |||||||||||| ||| ||||||| ||| Sbjct 2182 GATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGA 2241 Query 9015 ATTATTAGGGGATTAGACTACAAAAGGTGGGCTAGAGTGAATTTTGGGAATAATGATCAG 9074 | |||||||||||||| ||||| ||| | |||| | || | | |||||||| Sbjct 2242 AACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAA 2301 Query 9075 GTTCCATCACTAGGCTCTTTACTATCATCTGTAGCCACAAATGCCTTGACAGTCTCACA 9133 | || | |||| | | | || ||||| | |||||||||||||||||||||| Sbjct 2302 CTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAATGCCTTGACAGTCTCACA 2360 >seq57646 Length=1202957 Score = 82.4 bits (90), Expect = 6e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 8193 AAGATAAATGATGAAGGGTTAGATTTGGATTCTCTAATTATTGGGTTAAAAGCCAAAGAA 8252 |||||||||||| || ||||| || || | || |||| || ||| || |||||| Sbjct 1171156 AAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAA 1171097 Query 8253 AGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTTGAGAGAATAT 8312 |||||||| || ||| | || ||||| || || | ||| | ||| | | || || || Sbjct 1171096 AGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTAC 1171037 Query 8313 TTTGTATATACAGAGTAT-TTAATAAAGGAGT-ATTTTGTTCCATTATTCCATGGCTTGA 8370 |||||| ||||||||| ||| |||| | | | | | ||||| |||| || || | Sbjct 1171036 TTTGTAATAACAGAGTATCTTATTAAA--ATTCACTATATTCCACTATTTTCAGGGTTAA 1170979 Query 8371 CCATGGCAGATGA 8383 | ||||| ||||| Sbjct 1170978 CTATGGCCGATGA 1170966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41437587862088