Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_028235.1
Length=12994
Score E
Sequences producing significant alignments: (Bits) Value
seq28589 93.3 3e-15
seq57646 82.4 6e-12
>seq28589
Length=6593
Score = 93.3 bits (102), Expect = 3e-15
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 8955 GATGAAACTATGGTCAGTGCCGATTATTTAAATTATGGGAAAGTTCCTATATTTCGTGGA 9014
|||||||||||| ||| |||| | | |||||||||||| ||| ||||||| |||
Sbjct 2182 GATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGA 2241
Query 9015 ATTATTAGGGGATTAGACTACAAAAGGTGGGCTAGAGTGAATTTTGGGAATAATGATCAG 9074
| |||||||||||||| ||||| ||| | |||| | || | | ||||||||
Sbjct 2242 AACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAA 2301
Query 9075 GTTCCATCACTAGGCTCTTTACTATCATCTGTAGCCACAAATGCCTTGACAGTCTCACA 9133
| || | |||| | | | || ||||| | ||||||||||||||||||||||
Sbjct 2302 CTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAATGCCTTGACAGTCTCACA 2360
>seq57646
Length=1202957
Score = 82.4 bits (90), Expect = 6e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 8193 AAGATAAATGATGAAGGGTTAGATTTGGATTCTCTAATTATTGGGTTAAAAGCCAAAGAA 8252
|||||||||||| || ||||| || || | || |||| || ||| || ||||||
Sbjct 1171156 AAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAA 1171097
Query 8253 AGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTTGAGAGAATAT 8312
|||||||| || ||| | || ||||| || || | ||| | ||| | | || || ||
Sbjct 1171096 AGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTAC 1171037
Query 8313 TTTGTATATACAGAGTAT-TTAATAAAGGAGT-ATTTTGTTCCATTATTCCATGGCTTGA 8370
|||||| ||||||||| ||| |||| | | | | | ||||| |||| || || |
Sbjct 1171036 TTTGTAATAACAGAGTATCTTATTAAA--ATTCACTATATTCCACTATTTTCAGGGTTAA 1170979
Query 8371 CCATGGCAGATGA 8383
| ||||| |||||
Sbjct 1170978 CTATGGCCGATGA 1170966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 41437587862088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |