Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_028236.1
Length=11072
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 104 2e-18
>seq40018
Length=56561
Score = 104 bits (114), Expect = 2e-18
Identities = 280/427 (66%), Gaps = 10/427 (2%)
Strand=Plus/Plus
Query 6299 AGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAAT 6358
||||| ||||| || | || |||||| |||| || || || || | | || ||
Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610
Query 6359 GGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAG 6418
|| || || ||||| ||||| | || ||| | | | | ||| ||||| | || |
Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACAACG 43670
Query 6419 GGGCAAGGAGGGAGTGATTATTCTCAAATCTGTA----TTGCAAATCATATAGATTATGA 6474
|| || | | | ||||| ||| || ||| | ||||||| ||||| || ||
Sbjct 43671 GGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGA 43730
Query 6475 GAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCA 6534
||| ||||||||| | ||||| | | ||| ||| | ||| || ||| ||
Sbjct 43731 GAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTGC 43790
Query 6535 GTTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTCTTTGAAAATAGCTGGAT 6594
||| ||||||| ||| |||||||| | ||||||| ||||||||||| || || | |||
Sbjct 43791 GTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGAT 43850
Query 6595 ATACTACAATGGGAGACCTGACCTGATGACTGTCAGGGATGGAAGACTGCTTAACAGCAC 6654
||||| | | |||||| ||||||| || |||| | |||| || | |
Sbjct 43851 TTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATA---TGCTATTCAACTC 43907
Query 6655 CCCTCAAAG---AGTGTGTTGGGAGGGACAACTGGGAGGATTGGAGGGTTTAAGACAAAA 6711
|| | || ||||| ||| | ||||||| || || ||||| || ||||| ||||
Sbjct 43908 AACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAA 43967
Query 6712 GGGATGG 6718
|| |||
Sbjct 43968 AGGTTGG 43974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35291342772496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |