Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq40018 104 2e-18 >seq40018 Length=56561 Score = 104 bits (114), Expect = 2e-18 Identities = 280/427 (66%), Gaps = 10/427 (2%) Strand=Plus/Plus Query 6299 AGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAAT 6358 ||||| ||||| || | || |||||| |||| || || || || | | || || Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610 Query 6359 GGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAG 6418 || || || ||||| ||||| | || ||| | | | | ||| ||||| | || | Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACAACG 43670 Query 6419 GGGCAAGGAGGGAGTGATTATTCTCAAATCTGTA----TTGCAAATCATATAGATTATGA 6474 || || | | | ||||| ||| || ||| | ||||||| ||||| || || Sbjct 43671 GGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAGGA 43730 Query 6475 GAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCA 6534 ||| ||||||||| | ||||| | | ||| ||| | ||| || ||| || Sbjct 43731 GAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGTGC 43790 Query 6535 GTTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTCTTTGAAAATAGCTGGAT 6594 ||| ||||||| ||| |||||||| | ||||||| ||||||||||| || || | ||| Sbjct 43791 GTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTGAT 43850 Query 6595 ATACTACAATGGGAGACCTGACCTGATGACTGTCAGGGATGGAAGACTGCTTAACAGCAC 6654 ||||| | | |||||| ||||||| || |||| | |||| || | | Sbjct 43851 TTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATA---TGCTATTCAACTC 43907 Query 6655 CCCTCAAAG---AGTGTGTTGGGAGGGACAACTGGGAGGATTGGAGGGTTTAAGACAAAA 6711 || | || ||||| ||| | ||||||| || || ||||| || ||||| |||| Sbjct 43908 AACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAA 43967 Query 6712 GGGATGG 6718 || ||| Sbjct 43968 AGGTTGG 43974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35291342772496