Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_028255.1
Length=11003
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 156 3e-34
seq28589 118 7e-23
seq57646 109 4e-20
>seq40018
Length=56561
Score = 156 bits (172), Expect = 3e-34
Identities = 225/312 (72%), Gaps = 8/312 (3%)
Strand=Plus/Plus
Query 6237 TTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTC 6296
||| | ||||||||||||||||| || || || || |||||||||| ||| || ||||
Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607
Query 6297 AAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGA-TACATC 6355
|| || || || ||||||||||||||||| | | | | ||| ||| || | |||| |
Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACA-C 43666
Query 6356 CTCAGGTCAAGGAT-TGGACAATTACGA----GTCCATTTGTATCGCGAATCACATTGAT 6410
| || || |||| | | ||||| || ||| | ||| || |||| || ||
Sbjct 43667 AACGGGACA-GGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGAC 43725
Query 6411 TATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTGATG 6470
|| |||||||||||||| ||||| | | ||||||| | | | || ||||| |||
Sbjct 43726 TAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATG 43785
Query 6471 GGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGAAGAGC 6530
| |||| | || | || || | ||||||||||||||||||||||| ||||||||
Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845
Query 6531 TTGATCTACTAT 6542
||||| ||||||
Sbjct 43846 TTGATTTACTAT 43857
>seq28589
Length=6593
Score = 118 bits (130), Expect = 7e-23
Identities = 185/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 6860 AGGAAAGTTGGGCTTGGTTATCAACGATGATGAAACAATGCAGTCAGCGGATTATCTGAA 6919
|||||| | || ||| | |||||| |||||||| |||| || || |||| ||||
Sbjct 2155 AGGAAATTAGGTCTTA-TAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAG 2213
Query 6920 TTATGGGAAAATTCCCATCTTTCGCGGGGTGATAAGAGGACTCGAAACTAAAAGATGGTC 6979
|||||||||| | || | ||||| || || || ||| | || ||||||||||||||
Sbjct 2214 TTATGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTC 2273
Query 6980 GCGGGTCACATGTGTGACAAATGACCAAATTCCAACATGTGCGAATATCATGAGCTCGGT 7039
|| ||||| || ||| | ||||| ||| | || || | ||||||| || | ||
Sbjct 2274 ACGAGTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGT 2333
Query 7040 CTCTACAAATGCATTGACTGTGGCACATTTTGCGGAAAATCCAGTAAATGCCATGGTTCA 7099
||| ||||||| ||||| || |||| | |||||| ||| | ||| | | | ||
Sbjct 2334 ATCTTCAAATGCCTTGACAGTCTCACACTACTCGGAAAGCCCATTGAATTCTCTTATACA 2393
Query 7100 ATACAACTACTTTGGGACATTT 7121
||||||| ||| |||| ||||
Sbjct 2394 CTACAACTTCTTGGGGA-ATTT 2414
>seq57646
Length=1202957
Score = 109 bits (120), Expect = 4e-20
Identities = 386/593 (65%), Gaps = 24/593 (4%)
Strand=Plus/Minus
Query 5763 CTGGCTAGTGATTTGGCAAGGATTGTATTACAGCAGCAGTTTAATGAACACAAGAAGTGG 5822
|| |||||||| ||||| ||||| ||||| | || ||||| | | || || |||
Sbjct 1171522 CTAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAAAAATGG 1171463
Query 5823 TTTGTTGATCT-GAAGCGGATCCCAGACAAACATCCATTTTACAGTCATATCAAAGAGAA 5881
||||| || | | || ||| ||| | ||| | | || || || || | ||
Sbjct 1171462 TTTGTCAATATCGCAGGTATTCCAAGAGAT-CATGTACTCTATGACCACATTAAGAATAA 1171404
Query 5882 CACATGGCCTACAGCTGCTCAAGTTCAAGACTTCGGAGACCTGTGGCATGAACTTCCTTT 5941
|||||||| || | ||||| | || || || |||| ||||||||||| || ||
Sbjct 1171403 TACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTT 1171344
Query 5942 AACCAAATGTTTTGACATCCCTGACTTAATAGACCCCTCAATCATTTATTCGGATAAAAG 6001
| | ||||| ||||| || || || ||||||| || | |||||||| ||||||||
Sbjct 1171343 ATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAG 1171284
Query 6002 TCACTC----AATGAATC-GAAGTGAAGTTTTACGGCATGTTAGGAATAGCCCAA-ACAC 6055
|||||| | | || ||| | ||| | || ||| | | ||||| ||||
Sbjct 1171283 TCACTCTTATACTTTTTCAGAATTAAAG---GAGCATATCTTA-AAGTCTCCCAATACAC 1171228
Query 6056 ---TCCAATCCCTAGCAAAAAAGTGTTGCAGACCATGTTGGACACCACGGCTACCAATTG 6112
||| ||| | | || || | |||| | | | || || || |||||
Sbjct 1171227 CTGTCCCATCTC-----ATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTG 1171173
Query 6113 GTCTGAGTTCTTGAACCAAATAGACAAGTATGGACTAGACGATGAAGATTTGGTGATTGG 6172
| || ||| | || | ||| | | | |||| |||| || |||| || || ||
Sbjct 1171172 GAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGG 1171113
Query 6173 TCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATGTCTTG 6232
||| | ||| ||||| |||||| | ||| | || |||||||| || ||||| | ||
Sbjct 1171112 TCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATG 1171053
Query 6233 GAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGT--CCCC 6290
| || | | || || |||||||| || || |||||||| |||| |||| | | | |
Sbjct 1171052 GCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACT 1170993
Query 6291 ATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaT 6343
|| |||| || |||| ||||| |||||| ||| | | || || ||||| ||
Sbjct 1170992 ATTTTCA--GGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35070691934212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |