Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq40018 156 3e-34 seq28589 118 7e-23 seq57646 109 4e-20 >seq40018 Length=56561 Score = 156 bits (172), Expect = 3e-34 Identities = 225/312 (72%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 6237 TTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTC 6296 ||| | ||||||||||||||||| || || || || |||||||||| ||| || |||| Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 6297 AAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGA-TACATC 6355 || || || || ||||||||||||||||| | | | | ||| ||| || | |||| | Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACA-C 43666 Query 6356 CTCAGGTCAAGGAT-TGGACAATTACGA----GTCCATTTGTATCGCGAATCACATTGAT 6410 | || || |||| | | ||||| || ||| | ||| || |||| || || Sbjct 43667 AACGGGACA-GGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGAC 43725 Query 6411 TATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTGATG 6470 || |||||||||||||| ||||| | | ||||||| | | | || ||||| ||| Sbjct 43726 TAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATG 43785 Query 6471 GGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGAAGAGC 6530 | |||| | || | || || | ||||||||||||||||||||||| |||||||| Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 6531 TTGATCTACTAT 6542 ||||| |||||| Sbjct 43846 TTGATTTACTAT 43857 >seq28589 Length=6593 Score = 118 bits (130), Expect = 7e-23 Identities = 185/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 6860 AGGAAAGTTGGGCTTGGTTATCAACGATGATGAAACAATGCAGTCAGCGGATTATCTGAA 6919 |||||| | || ||| | |||||| |||||||| |||| || || |||| |||| Sbjct 2155 AGGAAATTAGGTCTTA-TAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAG 2213 Query 6920 TTATGGGAAAATTCCCATCTTTCGCGGGGTGATAAGAGGACTCGAAACTAAAAGATGGTC 6979 |||||||||| | || | ||||| || || || ||| | || |||||||||||||| Sbjct 2214 TTATGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTC 2273 Query 6980 GCGGGTCACATGTGTGACAAATGACCAAATTCCAACATGTGCGAATATCATGAGCTCGGT 7039 || ||||| || ||| | ||||| ||| | || || | ||||||| || | || Sbjct 2274 ACGAGTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGT 2333 Query 7040 CTCTACAAATGCATTGACTGTGGCACATTTTGCGGAAAATCCAGTAAATGCCATGGTTCA 7099 ||| ||||||| ||||| || |||| | |||||| ||| | ||| | | | || Sbjct 2334 ATCTTCAAATGCCTTGACAGTCTCACACTACTCGGAAAGCCCATTGAATTCTCTTATACA 2393 Query 7100 ATACAACTACTTTGGGACATTT 7121 ||||||| ||| |||| |||| Sbjct 2394 CTACAACTTCTTGGGGA-ATTT 2414 >seq57646 Length=1202957 Score = 109 bits (120), Expect = 4e-20 Identities = 386/593 (65%), Gaps = 24/593 (4%) Strand=Plus/Minus Query 5763 CTGGCTAGTGATTTGGCAAGGATTGTATTACAGCAGCAGTTTAATGAACACAAGAAGTGG 5822 || |||||||| ||||| ||||| ||||| | || ||||| | | || || ||| Sbjct 1171522 CTAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAAAAATGG 1171463 Query 5823 TTTGTTGATCT-GAAGCGGATCCCAGACAAACATCCATTTTACAGTCATATCAAAGAGAA 5881 ||||| || | | || ||| ||| | ||| | | || || || || | || Sbjct 1171462 TTTGTCAATATCGCAGGTATTCCAAGAGAT-CATGTACTCTATGACCACATTAAGAATAA 1171404 Query 5882 CACATGGCCTACAGCTGCTCAAGTTCAAGACTTCGGAGACCTGTGGCATGAACTTCCTTT 5941 |||||||| || | ||||| | || || || |||| ||||||||||| || || Sbjct 1171403 TACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTT 1171344 Query 5942 AACCAAATGTTTTGACATCCCTGACTTAATAGACCCCTCAATCATTTATTCGGATAAAAG 6001 | | ||||| ||||| || || || ||||||| || | |||||||| |||||||| Sbjct 1171343 ATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAG 1171284 Query 6002 TCACTC----AATGAATC-GAAGTGAAGTTTTACGGCATGTTAGGAATAGCCCAA-ACAC 6055 |||||| | | || ||| | ||| | || ||| | | ||||| |||| Sbjct 1171283 TCACTCTTATACTTTTTCAGAATTAAAG---GAGCATATCTTA-AAGTCTCCCAATACAC 1171228 Query 6056 ---TCCAATCCCTAGCAAAAAAGTGTTGCAGACCATGTTGGACACCACGGCTACCAATTG 6112 ||| ||| | | || || | |||| | | | || || || ||||| Sbjct 1171227 CTGTCCCATCTC-----ATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTG 1171173 Query 6113 GTCTGAGTTCTTGAACCAAATAGACAAGTATGGACTAGACGATGAAGATTTGGTGATTGG 6172 | || ||| | || | ||| | | | |||| |||| || |||| || || || Sbjct 1171172 GAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGG 1171113 Query 6173 TCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATGTCTTG 6232 ||| | ||| ||||| |||||| | ||| | || |||||||| || ||||| | || Sbjct 1171112 TCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATG 1171053 Query 6233 GAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGT--CCCC 6290 | || | | || || |||||||| || || |||||||| |||| |||| | | | | Sbjct 1171052 GCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACT 1170993 Query 6291 ATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaT 6343 || |||| || |||| ||||| |||||| ||| | | || || ||||| || Sbjct 1170992 ATTTTCA--GGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35070691934212