Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_031215.1
Length=12291
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 89.7 4e-14
seq40018 89.7 4e-14
>seq57646
Length=1202957
Score = 89.7 bits (98), Expect = 4e-14
Identities = 129/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 7316 TTATCGGGTTGAAAGAGAAGGAGAGAGAGATCAAAA--TTAACGGTCGTTTTTTCTCTCT 7373
|||| || | | || ||| || ||||| || |||| ||| ||| | || ||||||||
Sbjct 1171119 TTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTA--GGTAGATTCTTCTCTCT 1171062
Query 7374 GATGTCATGGGATTTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTT 7433
|||| ||||| | | || ||||||||||| ||||| || ||||| || || | || |
Sbjct 1171061 GATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTA 1171002
Query 7434 TGTCCCTCTTTTCTATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAAGAT 7493
| | || || || | || ||||||||||||||||| | | | ||| ||| |||||
Sbjct 1171001 TATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942
>seq40018
Length=56561
Score = 89.7 bits (98), Expect = 4e-14
Identities = 208/308 (68%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 7387 TTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTTTGTCCCTCTTTTC 7446
|| ||||| || ||||| || || || || || || || ||||| | ||| | || ||
Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607
Query 7447 TATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAAGATGATGGAGAATACT 7506
| ||||| |||||||| |||||| | || || | | ||||||||| | | ||
Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667
Query 7507 AGCGGTCAGGGCTCTGA-TGATTATGAACACATCGGAA----TTGCAAACCACCTTGATT 7561
| || |||| ||| | | ||||||| || || | | | ||||| | | || |
Sbjct 43668 ACGGGACAGGA-TCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACT 43726
Query 7562 ACGAAAAATGGAACAACCATCAGAGATATCAGTCCACTGAGCCGGTATTTACG-GTGATG 7620
| || ||||||||||| |||| || || |||| || | | || || || |||
Sbjct 43727 AGGAGAAATGGAACAATAATCAAAGGAGACAATCCA-ACAGTCTGATCTTCCGTGTAATG 43785
Query 7621 GGAAAGTTTTTGGGTTATCCTAATTTGATTGCCAGGACCCATGAGTTCTTTGAAAAGAGT 7680
| ||| ||||| | ||| ||||| |||| ||||| || || |||||||| ||||||
Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845
Query 7681 TTTATCTA 7688
|| || ||
Sbjct 43846 TTGATTTA 43853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 39189507582180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |