Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031215.1 Length=12291 Score E Sequences producing significant alignments: (Bits) Value seq57646 89.7 4e-14 seq40018 89.7 4e-14 >seq57646 Length=1202957 Score = 89.7 bits (98), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 7316 TTATCGGGTTGAAAGAGAAGGAGAGAGAGATCAAAA--TTAACGGTCGTTTTTTCTCTCT 7373 |||| || | | || ||| || ||||| || |||| ||| ||| | || |||||||| Sbjct 1171119 TTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTA--GGTAGATTCTTCTCTCT 1171062 Query 7374 GATGTCATGGGATTTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTT 7433 |||| ||||| | | || ||||||||||| ||||| || ||||| || || | || | Sbjct 1171061 GATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTA 1171002 Query 7434 TGTCCCTCTTTTCTATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAAGAT 7493 | | || || || | || ||||||||||||||||| | | | ||| ||| ||||| Sbjct 1171001 TATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 89.7 bits (98), Expect = 4e-14 Identities = 208/308 (68%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 7387 TTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTTTGTCCCTCTTTTC 7446 || ||||| || ||||| || || || || || || || ||||| | ||| | || || Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 7447 TATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAAGATGATGGAGAATACT 7506 | ||||| |||||||| |||||| | || || | | ||||||||| | | || Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667 Query 7507 AGCGGTCAGGGCTCTGA-TGATTATGAACACATCGGAA----TTGCAAACCACCTTGATT 7561 | || |||| ||| | | ||||||| || || | | | ||||| | | || | Sbjct 43668 ACGGGACAGGA-TCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACT 43726 Query 7562 ACGAAAAATGGAACAACCATCAGAGATATCAGTCCACTGAGCCGGTATTTACG-GTGATG 7620 | || ||||||||||| |||| || || |||| || | | || || || ||| Sbjct 43727 AGGAGAAATGGAACAATAATCAAAGGAGACAATCCA-ACAGTCTGATCTTCCGTGTAATG 43785 Query 7621 GGAAAGTTTTTGGGTTATCCTAATTTGATTGCCAGGACCCATGAGTTCTTTGAAAAGAGT 7680 | ||| ||||| | ||| ||||| |||| ||||| || || |||||||| |||||| Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 7681 TTTATCTA 7688 || || || Sbjct 43846 TTGATTTA 43853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39189507582180