Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq28589 91.5 1e-14 seq57646 78.8 7e-11 >seq28589 Length=6593 Score = 91.5 bits (100), Expect = 1e-14 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 6946 GGACTGAAAATCAATCAAGACGAGACAATGCAATCTGCTGATTTCACCAATTATGGTAAA 7005 || || | |||||| ||| || || |||| |||||| |||||| | |||||| ||| Sbjct 2164 GGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAA 2223 Query 7006 ATACCGATAATCCGAGGAAACATATACCCATTAGAGACAAAAAGATGGTCTAGGGCTGCT 7065 | || || | ||||||||||| ||||||||| ||||||||||| | | || Sbjct 2224 GTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACT 2283 Query 7066 TGTGTGACTAATGATCAGTTACCCAGCCTAGGAAATGTTATGTCTACTGTCAGTTCCAAT 7125 || ||| | |||||||| | ||| | |||| ||| | |||| ||||| ||| ||| Sbjct 2284 TGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAAT 2343 Query 7126 GCACTGAC 7133 || |||| Sbjct 2344 GCCTTGAC 2351 >seq57646 Length=1202957 Score = 78.8 bits (86), Expect = 7e-11 Identities = 127/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 6220 GGAATAGAGCTGAAGCATTTGATCATTGGCCTTAAGGCGAAAGAGAGGGAACTAAAAGCA 6279 ||| ||||| | ||||||| | || || || | | |||||| || ||| ||||| | Sbjct 1171141 GGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGA 1171082 Query 6280 CAGGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAA 6339 || ||||||||||| ||| | | ||| ||| || || || ||||| |||| || Sbjct 1171081 TTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAG 1171022 Query 6340 TATCTTATAAAGATCCATTTCCTCCCTCT-TTTTAAGGGACTGACTATGGCTGATGACTT 6398 |||||||| || || || | | || || |||| |||| | |||||||| ||||| || Sbjct 1171021 TATCTTATTAAAATTCACTATATTCCACTATTTTCAGGG-TTAACTATGGCCGATGATTT 1170963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35588741728444