Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq57646 206 2e-49 >seq57646 Length=1202957 Score = 206 bits (228), Expect = 2e-49 Identities = 473/701 (67%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 5927 TATGGGTCATTTAGACACTGGGGTCACCCTTACATAGACTATTTCACAGGGCTAGAAAAA 5986 ||||| |||||| |||| ||||||||||| | |||| ||| | ||| || |||| Sbjct 1171636 TATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAGGCCTTACAAAA 1171577 Query 5987 CTATACGAACAAGTCTCTCTGGATAAAAAGATTGATCTCAAATATGCGGAGTTACTTGCT 6046 |||| || ||| | || | || || |||||| | || || || || ||| Sbjct 1171576 TTATATGAGCAAACTACACTTAAAAAGAATATTGATTTAAATTACGCCTCACAGCTAGCT 1171517 Query 6047 AGTGATTTGGCATTCTTAGTAATTAAAGATCAATTTCAAACAAAAAAGTGGTGGCCTGTT 6106 ||||| |||||||| | || | ||||||||||| ||| ||| || ||| ||| Sbjct 1171516 AGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAAAAATGGTTTGTC 1171457 Query 6107 GATAAAGAAAAAGTCCCTGAAGATCATCCACTAAAAAAGTATATCATGAACAACACATGG 6166 ||| | | | || ||||||| ||| | | | || | ||| || |||||| Sbjct 1171456 AATATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCACATTAAGAATAATACATGG 1171397 Query 6167 CCGAATAATAGCACAATCGTAAATTTCGGAGATCATTGGCATGAGTTGCCTTTAATTAAA 6226 || | | || ||| || |||| || || | |||||||| | || ||| |||| Sbjct 1171396 CCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTTATCTAAA 1171337 Query 6227 TGTTTTGATATACCTGATGTTGTGGACCCATCTATTATTTATTCAGATAAAAGTCATTCC 6286 || ||||| ||||| ||||| | || || | | |||||||||||||||||||| || Sbjct 1171336 TGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCT 1171277 Query 6287 CTCACCAGATCAGAAATAAAAAATTAT---TTAACCCTTCATCCAAATTCATCGATACCC 6343 || |||||| |||| | || |||| || ||| ||| || | | || Sbjct 1171276 TATACTTTTTCAGAATTAAAGGAGCATATCTTAAAG--TC-TCCCAATACACCTGTCCCA 1171220 Query 6344 TCTAAAAAAGTTCTCTCCACACTTTTAGAAAGCCCAAGC-ACAAATTGGCCGGAGTTTCT 6402 ||| | || || ||| ||| | | ||| | |||| ||||||||| ||| || || Sbjct 1171219 TCTCATAAGGTACTCAAGACATTCCTTCAAA-CAGAAGCCACAAATTGGAAGGAATTCCT 1171161 Query 6403 ACAACGA-ATAAATGATTTTGGGATCTCAATT-GAACATTTAGTGATTGGTTTAAAAGAG 6460 ||| | |||||||||||||| || | || || |||||||| || ||| ||| || | Sbjct 1171160 -CAAGAAGATAAATGATTTTGG-ATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGG 1171103 Query 6461 AAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAGA 6520 ||||||||||| | || | | ||| ||||| ||| || | ||| | ||| | | || Sbjct 1171102 AAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGG 1171043 Query 6521 GATTATTTTGTAATGACAGAATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGACGGA 6580 ||||| |||||||| ||||| ||| | ||||||| ||| | | | || || ||| || Sbjct 1171042 GATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGG 1170983 Query 6581 TTAACAATGGCTGATGATCTAACAACTGTTATCGGAAAGAT 6621 ||||| ||||| |||||| ||| | ||||| |||||| Sbjct 1170982 TTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36791128905180