Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq57646 78.8 5e-11 >seq57646 Length=1202957 Score = 78.8 bits (86), Expect = 5e-11 Identities = 107/148 (72%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 3698 AAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAGAGAGTATTTTGTATC 3757 |||||| | || ||||| |||||||||||||| ||| | || || || || |||||| Sbjct 1171087 AAAAGAT-TAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAAT 1171029 Query 3758 CACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGGACTCACCATGGCAGA 3817 || ||||| || ||||| || | ||| |||| | ||| ||| | || ||||| || Sbjct 1171028 AACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGA 1170969 Query 3818 TGATCTAAAATCTGTAACACGAAAGATA 3845 |||| |||| || || | ||||||| Sbjct 1170968 TGATTTAAATTCAGTTATGAAAAAGATA 1170941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27651707226692