Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq57646 120 2e-23 seq40018 120 2e-23 >seq57646 Length=1202957 Score = 120 bits (132), Expect = 2e-23 Identities = 451/689 (65%), Gaps = 30/689 (4%) Strand=Plus/Minus Query 6784 TGTATGGATCATTCCGACATTGGGGACATCCGTACATTGATTATCTGAACGGGTTGAGGC 6843 ||||||||||||| ||||||||||| || |||| | || ||| || | || | | Sbjct 1171638 TGTATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAGGCCTTACAA 1171579 Query 6844 TGTTGCATTATCAGGTCAATTGTGAAAAACAA-ATTGATACAAATTACGCTAATCAGCTT 6902 || || | || | | | ||||| || |||||| ||||||||| ||||| Sbjct 1171578 AATTATATGAGCAAA-CTACACTTAAAAAGAATATTGATTTAAATTACGCCTCACAGCTA 1171520 Query 6903 GCTAGTGATTTAGCATATATAGTGTTGCATGATCAATTTAAGAAGAAGAAAACATGGATG 6962 |||||||| | |||| || ||||| || ||||||||||| | ||||||| |||| | Sbjct 1171519 GCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAAAAATGGTTT 1171460 Query 6963 GTGGATATTGATCAGATGGATAGGAACA-ATCTTATGTA-TCCATT----CGTGAAACAA 7016 || |||| | ||| | || || | ||| ||||| || || | | || | Sbjct 1171459 GTCAATATCG--CAGGT--ATTCCAAGAGATC--ATGTACTCTATGACCACATTAAGAAT 1171406 Query 7017 AATACATGGCCTACACCTGCTTTGATAGATGACTTCGGTGATCACTGGCATCAATTGCCG 7076 ||||||||||| || | | || |||| ||| || ||||| | |||||| || | ||| Sbjct 1171405 AATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTACCG 1171346 Query 7077 CTCAAAAAATGTTTTGACATACCGGATATGTTTGATCCTTCCACGTTGTATTCAGATAAG 7136 | ||||| ||||| ||||| ||| | | |||||| | ||||||||||| Sbjct 1171345 TTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGATAAA 1171286 Query 7137 AGTCACTCTATGAACAAGAAC-GAGGTAATCGATTTTATGAGAAAGAACCCTGATCAGCC 7195 ||||||||| | || | || ||| || ||| |||| || || || Sbjct 1171285 AGTCACTCT-TATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCAATACACC 1171227 Query 7196 GATTCCTTCAAAGAAGGTTTTGTACAC---CCTACTCACT-AGGCCTTCTAGAGATTGGC 7251 | || || | ||||| | | || ||| | || | ||| | | ||||| Sbjct 1171226 TGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCC----ACAAATTGGA 1171171 Query 7252 CAACTTTTCTGAAACAAATCAACGATGAGGGTCTCGATATCAACGCCTTGA-TAATAGGC 7310 || || || | || || ||| || | || | | || || | | ||||| Sbjct 1171170 AGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGA-GCATTTAGTTATAGGT 1171112 Query 7311 TTAAGAGAGAAAGAAAGAGAAAT--CAAGATCAATGGCCGATTCTTTTCTCTGATGTCCT 7368 |||||| ||||||||||||||| ||||| | || ||||||| ||||||||| | | Sbjct 1171111 CTAAGAGGGAAAGAAAGAGAAATAAAAAGATTA--GGTAGATTCTTCTCTCTGATGACAT 1171054 Query 7369 GGGATTTACGAGATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCC 7428 || | | | ||||| ||||| ||||| |||||||| ||||||| || | | |||| | Sbjct 1171053 GGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCAC 1170994 Query 7429 TCTTTTATGGACTGACAATGGCTGATGAT 7457 | |||| || | || ||||| |||||| Sbjct 1170993 TATTTTCAGGGTTAACTATGGCCGATGAT 1170965 >seq40018 Length=56561 Score = 120 bits (132), Expect = 2e-23 Identities = 214/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 7374 TTACGAGATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCCTCTTT 7433 ||| |||| |||||||| || || ||||| ||||||||||| || | ||| |||| || Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 7434 TATGGACTGACAATGGCTGATGATATGACAACAGTAGTACGCAAGATGATGGAAAACACC 7493 | || || || ||||| |||||| | || ||| | | ||||||||| | |||| Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACACA 43667 Query 7494 AGTGGACAGGGTTCTGATGATTATGAGCA---CA-TAGGAATTGCCAATCACTTGGATTA 7549 | ||||||| | || ||||||| || || ||| || || |||| | || || Sbjct 43668 ACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTA 43727 Query 7550 TGAAAAGTGGAATAATCACCAAAGATACCAATCTACAGAACCTG-TATTCACAGTCATGG 7608 || || ||||| ||| | ||||| ||||| | | | ||| | ||| || ||| Sbjct 43728 GGAGAAATGGAACAATAATCAAAGGAGACAATCCA-ACAGTCTGATCTTCCGTGTAATGA 43786 Query 7609 GCAAATTCCTCGGATATCCGAATTTAATTGCGAGAACTCATGAGTTCTTCGAGAAAAGCT 7668 | ||| | || | |||||||||||||| ||| || || || ||||| ||||| || | Sbjct 43787 GTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTT 43846 Query 7669 TCATTTAC 7676 | |||||| Sbjct 43847 TGATTTAC 43854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39048802699796