Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq57646 143 2e-30 seq40018 113 4e-21 >seq57646 Length=1202957 Score = 143 bits (158), Expect = 2e-30 Identities = 371/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 7375 GATCAACATACAAAGAAGAAAAAATGGTTTGTAGATGATACACAAGTC--CCAGTTGATA 7432 |||||| || || ||||||||||||||||| || || | || || ||| ||| Sbjct 1171489 GATCAATTTAAAAGAAAGAAAAAATGGTTTGTCAAT-AT-CGCAGGTATTCCAAGAGATC 1171432 Query 7433 GTTTACTGTATCCCCACATATTACACAACACTTGGCCAACTC---CTCACATCATTGAAC 7489 | |||| ||| |||||| | || || |||||||||| |||| || |||| Sbjct 1171431 ATGTACTCTATGACCACATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGAT- 1171373 Query 7490 AATTTGGGGATCACTGGCATGAATTGCCAATTAT-TAAGTGTTTCGATATCCCCGATGTG 7548 ||||| || | ||||||||| | || |||| ||| || || || || |||||||| Sbjct 1171372 --TTTGGTGACCGATGGCATGAACTACCG-TTATCTAAATGCTTTGAGATACCCGATGTA 1171316 Query 7549 ATTGATCCATCATTGATATATTCTGATAAGAGTCATTCAGTCACACGGTCTGAATTAAAA 7608 || ||||| || || ||||| ||||| ||||| || || || |||||||| Sbjct 1171315 ATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAG 1171256 Query 7609 GAACATATAGCTAAATCACCGTACAAACCCGTGTCAAATCCAAAAGTTTTGAAATCTTTA 7668 || ||||| || || || | | ||| || || || || || | || | || Sbjct 1171255 GAGCATATCTTAAAGTCTCCCAATACACCTGTCCCATCTCATAAGGTACTCAAGACATTC 1171196 Query 7669 TTAACTAAACCG--GCTACTGATTGGCCCTCATTTCTGGAATCAATTGATAAGTACGGAT 7726 | |||| | || || ||||| ||| || | || || | | |||| Sbjct 1171195 CTTC--AAACAGAAGCCACAAATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGAT 1171138 Query 7727 TAGATCTGGAATATTTAATCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACG 7786 |||| | || ||||| | || || ||| | |||||| ||||||| || | | | Sbjct 1171137 TAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAG 1171078 Query 7787 GGAGATTCTTCTCTCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATT 7846 | |||||||||||||| ||| | ||||||||||||||||||||||||||||| || ||| Sbjct 1171077 GTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATC 1171018 Query 7847 TGATCAAGCAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGA 7906 | || || |||| | | ||| |||| || || |||||||| |||||| | | Sbjct 1171017 TTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATT 1170958 Query 7907 CTGTTATCAAGAAAAT 7922 | ||||| || || || Sbjct 1170957 CAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 113 bits (124), Expect = 4e-21 Identities = 284/426 (67%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 7819 AGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTTTGTCCCATTATTCGAC 7878 || || || |||||||| ||||| || |||| || ||||| ||| | | || | Sbjct 43551 AGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAA 43610 Query 7879 GGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAAA-ATGATGGACAACGCAAA 7937 ||| | ||||||||||||||||| || || | | ||| ||| |||||| || || ||| Sbjct 43611 GGTCTCACTATGGCAGATGATCTAACCACACTGA-CAACAAAGATGATGAACTACACAAC 43669 Query 7938 TGGTCAAGGAT-TAGATACCTATGATTAT----ATATCCATAGCCAATCATATAGATTAT 7992 || | ||||| || ||| |||||| || || ||||| |||| ||||| || Sbjct 43670 GGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAG 43728 Query 7993 GAAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACCCCAGTATTTAAGGTAATGGGT 8052 || || ||||| ||| |||| |||| | |||||| | | | || |||||| || Sbjct 43729 GAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGAGT 43788 Query 8053 CAATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCACGAATTCTTCGAAAGGAGTTTA 8112 ||| | || | || || | ||| | || ||||||||||| || | |||||| Sbjct 43789 GCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTTG 43848 Query 8113 ATTTACCATGGCGGGAGAACAGACCTAATGAGGATCGTCAATGGTGAAGTAGAAAATAAT 8172 |||||| ||| || | | | || || |||||| | | ||| | || || Sbjct 43849 ATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAACTCA 43908 Query 8173 TCGGATATCCGAGTATGTTGGAATGGACAGAAAGGAGGTCTGGAAGGATTGAGACAGAAA 8232 | |||| || || ||||||||||| ||| ||| ||||||| | ||| | ||| Sbjct 43909 ACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAAA 43968 Query 8233 GGTTGG 8238 |||||| Sbjct 43969 GGTTGG 43974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40340729347140