Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_031301.1
Length=11103
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 150 1e-32
seq40018 89.7 4e-14
>seq57646
Length=1202957
Score = 150 bits (166), Expect = 1e-32
Identities = 458/693 (66%), Gaps = 16/693 (2%)
Strand=Plus/Minus
Query 5748 TATTAGTAGTGTATGGATCATTTCGACATTGGGGACATCCATTTATTGATTATCTACTAG 5807
|||||||||||||||||||||||||||||||||| || || ||| | || ||| | | ||
Sbjct 1171647 TATTAGTAGTGTATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAG 1171588
Query 5808 GA-TTGGAAGCACTTCATA----CACAAGTACATCTACCAAAACGTATAGATGAAAATTA 5862
| || || | || ||| || || |||| || || | ||| ||| ||||||
Sbjct 1171587 GCCTTACAA--AATT-ATATGAGCA-AACTACACTTAAAAAGAA-TATTGATTTAAATTA 1171533
Query 5863 TGCCAAATTACTAGGAAGTGATCTTGCATATTTGGTATTA-AAGAAGAAATTTACCGAAG 5921
||| | |||| ||||| | |||| | || ||| |||| || || | |||
Sbjct 1171532 CGCCTCACAGCTAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAA 1171473
Query 5922 AAAAGAAATGGTATGTAGATCTAACCAAAATAGAACAAAATCATCCTCTATATAAACATA 5981
||| ||||||| ||| || | | || | | ||||| || ||| | || |
Sbjct 1171472 GAAA-AAATGGTTTGTCAATATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCACA 1171414
Query 5982 TTCAAGAGAATACATGGCCAACTCCAAAACAAATTGAGGACTTTGGAGATAAATGGAATG 6041
|| | | |||||||||||||||| ||||| | || ||||| || |||| |||
Sbjct 1171413 TTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATG 1171354
Query 6042 AGTTGCCTTTAACAAAATGTTTTGATATCCCTGATATAATTGATCCCAGTTTACTTTATT 6101
| | || ||| | ||||| ||||| || || ||| |||| ||||| |||||| ||||||
Sbjct 1171353 AACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATT 1171294
Query 6102 CAGATAAGAGTCACTCTATGAATAGGGATGAAGTTATTAATCATGTTTCAAGGTATCCAA 6161
||||||| ||||||||| | | ||| | | | ||| | | || || ||| |
Sbjct 1171293 CAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCA 1171234
Query 6162 ATGTCCCTATTCCAACAAAAAAGGTCTTAGATACATTACTACATACTAAAAGTACCAATT 6221
|| ||| | ||| | | ||||| | | ||||| || || || || || ||||
Sbjct 1171233 ATACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATT 1171174
Query 6222 GGCCTGTGTTTTTACAAGAA-ATTAACGATCATGGATTACCAAGAAATTCTAAAATTATT 6280
|| | || | |||||| || || ||| ||||||| | | | | ||||
Sbjct 1171173 GGAAGGAATTCCT-CAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATA 1171115
Query 6281 GG-CTTGAAGGGAAAGGAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCTAATGTC 6339
|| || ||||||| ||| | ||| | || | | |||| | ||||| ||||| ||| |
Sbjct 1171114 GGTCTAAGAGGGAAA-GAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGAC 1171056
Query 6340 ATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAATTACGTTCC 6399
|||| | | || || ||||| |||||||| ||| | || || | || ||||
Sbjct 1171055 ATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCC 1170996
Query 6400 TCTGTTTAGTGGATTGACAATGGCTGATGATTT 6432
|| ||| || || || ||||| ||||||||
Sbjct 1170995 ACTATTTTCAGGGTTAACTATGGCCGATGATTT 1170963
>seq40018
Length=56561
Score = 89.7 bits (98), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 5/204 (2%)
Strand=Plus/Plus
Query 5924 AAGAAATGGTATGTAGATCTAACCAAAATAGAACAAAATCATCCTCTATATAAACATATT 5983
||||| ||||||||| | |||| || | | |||||| ||||||||||||||
Sbjct 43136 AAGAAGTGGTATGTAAAGAAGACCAC--TACATCGTAATCATATCCTATATAAACATATA 43193
Query 5984 CAAGAGAATACATGGCCAACTCCAAAACAAATTGAGGACTTTGGAGATAAATGGAATGAG 6043
| ||| | || ||||||||||| |||||||| ||||| || || || ||| | |
Sbjct 43194 CGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCGGGGACAAGTGGCACATG 43253
Query 6044 TTGCCTTTAACAAAATGTTTTGATATCCCTGATATAATTGAT---CCCAGTTTACTTTAT 6100
| || | || ||||| || || |||||||| || ||| ||| | || | |||
Sbjct 43254 CTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATGCATCCACTATATTATAT 43313
Query 6101 TCAGATAAGAGTCACTCTATGAAT 6124
| ||||||| |||||| ||||||
Sbjct 43314 GCGGATAAGAATCACTCCATGAAT 43337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35390475757812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |