Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq57646 150 1e-32 seq40018 89.7 4e-14 >seq57646 Length=1202957 Score = 150 bits (166), Expect = 1e-32 Identities = 458/693 (66%), Gaps = 16/693 (2%) Strand=Plus/Minus Query 5748 TATTAGTAGTGTATGGATCATTTCGACATTGGGGACATCCATTTATTGATTATCTACTAG 5807 |||||||||||||||||||||||||||||||||| || || ||| | || ||| | | || Sbjct 1171647 TATTAGTAGTGTATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAG 1171588 Query 5808 GA-TTGGAAGCACTTCATA----CACAAGTACATCTACCAAAACGTATAGATGAAAATTA 5862 | || || | || ||| || || |||| || || | ||| ||| |||||| Sbjct 1171587 GCCTTACAA--AATT-ATATGAGCA-AACTACACTTAAAAAGAA-TATTGATTTAAATTA 1171533 Query 5863 TGCCAAATTACTAGGAAGTGATCTTGCATATTTGGTATTA-AAGAAGAAATTTACCGAAG 5921 ||| | |||| ||||| | |||| | || ||| |||| || || | ||| Sbjct 1171532 CGCCTCACAGCTAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAA 1171473 Query 5922 AAAAGAAATGGTATGTAGATCTAACCAAAATAGAACAAAATCATCCTCTATATAAACATA 5981 ||| ||||||| ||| || | | || | | ||||| || ||| | || | Sbjct 1171472 GAAA-AAATGGTTTGTCAATATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCACA 1171414 Query 5982 TTCAAGAGAATACATGGCCAACTCCAAAACAAATTGAGGACTTTGGAGATAAATGGAATG 6041 || | | |||||||||||||||| ||||| | || ||||| || |||| ||| Sbjct 1171413 TTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATG 1171354 Query 6042 AGTTGCCTTTAACAAAATGTTTTGATATCCCTGATATAATTGATCCCAGTTTACTTTATT 6101 | | || ||| | ||||| ||||| || || ||| |||| ||||| |||||| |||||| Sbjct 1171353 AACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATT 1171294 Query 6102 CAGATAAGAGTCACTCTATGAATAGGGATGAAGTTATTAATCATGTTTCAAGGTATCCAA 6161 ||||||| ||||||||| | | ||| | | | ||| | | || || ||| | Sbjct 1171293 CAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCA 1171234 Query 6162 ATGTCCCTATTCCAACAAAAAAGGTCTTAGATACATTACTACATACTAAAAGTACCAATT 6221 || ||| | ||| | | ||||| | | ||||| || || || || || |||| Sbjct 1171233 ATACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATT 1171174 Query 6222 GGCCTGTGTTTTTACAAGAA-ATTAACGATCATGGATTACCAAGAAATTCTAAAATTATT 6280 || | || | |||||| || || ||| ||||||| | | | | |||| Sbjct 1171173 GGAAGGAATTCCT-CAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATA 1171115 Query 6281 GG-CTTGAAGGGAAAGGAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCTAATGTC 6339 || || ||||||| ||| | ||| | || | | |||| | ||||| ||||| ||| | Sbjct 1171114 GGTCTAAGAGGGAAA-GAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGAC 1171056 Query 6340 ATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAATTACGTTCC 6399 |||| | | || || ||||| |||||||| ||| | || || | || |||| Sbjct 1171055 ATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCC 1170996 Query 6400 TCTGTTTAGTGGATTGACAATGGCTGATGATTT 6432 || ||| || || || ||||| |||||||| Sbjct 1170995 ACTATTTTCAGGGTTAACTATGGCCGATGATTT 1170963 >seq40018 Length=56561 Score = 89.7 bits (98), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 5924 AAGAAATGGTATGTAGATCTAACCAAAATAGAACAAAATCATCCTCTATATAAACATATT 5983 ||||| ||||||||| | |||| || | | |||||| |||||||||||||| Sbjct 43136 AAGAAGTGGTATGTAAAGAAGACCAC--TACATCGTAATCATATCCTATATAAACATATA 43193 Query 5984 CAAGAGAATACATGGCCAACTCCAAAACAAATTGAGGACTTTGGAGATAAATGGAATGAG 6043 | ||| | || ||||||||||| |||||||| ||||| || || || ||| | | Sbjct 43194 CGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCGGGGACAAGTGGCACATG 43253 Query 6044 TTGCCTTTAACAAAATGTTTTGATATCCCTGATATAATTGAT---CCCAGTTTACTTTAT 6100 | || | || ||||| || || |||||||| || ||| ||| | || | ||| Sbjct 43254 CTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATGCATCCACTATATTATAT 43313 Query 6101 TCAGATAAGAGTCACTCTATGAAT 6124 | ||||||| |||||| |||||| Sbjct 43314 GCGGATAAGAATCACTCCATGAAT 43337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35390475757812