Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq40018 113 3e-21 >seq40018 Length=56561 Score = 113 bits (124), Expect = 3e-21 Identities = 292/434 (67%), Gaps = 17/434 (4%) Strand=Plus/Plus Query 6496 TAAGGGATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTTGTTCCTCTATTTG 6555 |||| || ||||||||||| || |||||| ||||||||||||||| ||| | || || Sbjct 43549 TAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAA 43608 Query 6556 ATGGACTCACAATGGCAGATGACTTAACAACGGTAATCGGGAAAATTCTTCGAA--ACAC 6613 | || ||||| ||||||||||| |||| || | | || || | ||| |||| Sbjct 43609 AAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGAT--GAACTACAC 43666 Query 6614 GGAAGGACAAGGAGATACAT-CCTATGAAAATGTGA----CTTTTGCTGATCATATTGAT 6668 |||| |||| || || ||||| |||| | | | || ||| || || Sbjct 43667 AACGGGAC-AGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGAC 43725 Query 6669 TATGAAAAATGGAATAATCACCAAAGAGCAGAGGGAAACAACCCTACCTTCAGGGTTATG 6728 || || |||||||| ||| | ||||| | | |||| | | |||| | || ||| Sbjct 43726 TAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATG 43785 Query 6729 GGTCAATTTTTAGGGTACCCAAATTTGATTGAAAGAACACATGAAATCTTTGAAAAATCT 6788 || || || |||| || ||||| ||||| || ||||| ||| ||||||| || | Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 6789 TGGATATACTATAATCGA-AGAGGAGATTTGATTGGGGTAGACGACAATGATAAGCTGTA 6847 | ||| |||||| ||| | | ||| |||| ||||||| | |||||| ||| | Sbjct 43846 TTGATTTACTAT-GCCGATAAACCTGATCTGATGAGGGTAGAAG---ATGATATGCTATT 43901 Query 6848 CAAC-AAAGGGCCACACAGAGTTTGTTGGAATGGACAAAGAGGAGGACTGGAAGGTCTTC 6906 |||| || | | | || || |||||||||||| |||| || ||||||| || Sbjct 43902 CAACTCAACTGATAGGTTG-GTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAA 43960 Query 6907 GTCAAAAAGGGTGG 6920 | ||||||| ||| Sbjct 43961 GATAAAAAGGTTGG 43974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36244298566824