Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq57646 100 2e-17 >seq57646 Length=1202957 Score = 100 bits (110), Expect = 2e-17 Identities = 337/517 (65%), Gaps = 6/517 (1%) Strand=Plus/Minus Query 5642 AAGAAAAAATGGTTTGTGAACCATCTCCAG-ATCCCACCGAATCATCCCTTCAGAGATCA 5700 ||||||||||||||||| || ||| | | || ||| ||||| || || || Sbjct 1171474 AAGAAAAAATGGTTTGTCAAT-ATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCA 1171416 Query 5701 CATTCATCATAACACATGGCCGACCCCCAAACAAGTTGATGATTTCGGAGACCACTGGCA 5760 |||| | |||| |||||||| || | ||| | | |||||| || |||| ||||| Sbjct 1171415 CATTAAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCA 1171356 Query 5761 CGAACTTCCACTCACCAAGTGTTTTGAAATCCCAGATGTGATTGATCCAAGCTTACTTTA 5820 ||||| || | | || || ||||| || || ||||| || ||||| || ||| |||| Sbjct 1171355 TGAACTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTA 1171296 Query 5821 TTCAGATAAAAGCCACTCCCTACCCCGGGCAGAGGTCATCCAATTTGTC-AAAAGTGGGA 5879 |||||||||||| ||||| | |||| | | | | || ||||| Sbjct 1171295 TTCAGATAAAAGTCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGT-CTC 1171237 Query 5880 AGAAGGGCCCCATTCCTTCTCTGAAGGTTTTGGACACTCTCCTTAAGACCTCTGCCACAA 5939 || || | || |||| ||||| | | || ||||| | || ||||||| Sbjct 1171236 CCAATACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAA 1171177 Query 5940 ACTGGCCAGAGTTTCTTCA-AAGAGTGAATGATGACGGGATACCTAGAGATCAGCTGGTT 5998 | ||| || || || | |||| | |||||| || || ||| || | ||| Sbjct 1171176 ATTGGAAGGAATTCCTCAAGAAGA-TAAATGATTTTGGATTAGAGTTAGAGCATTTAGTT 1171118 Query 5999 ATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGCGCTTCTTCTCATTGATG 6058 || || || | |||||| ||| | || | || | | || | |||||||| ||||| Sbjct 1171117 ATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATG 1171058 Query 6059 TCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATCAAGCTTCACTATGTT 6118 ||||| | | || || || || | || ||||| ||||| || |||||||| || Sbjct 1171057 ACATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATT 1170998 Query 6119 CCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAA 6155 || || || ||||| | |||||||| |||||| ||| Sbjct 1170997 CCACTATTTTCAGGGTTAACTATGGCCGATGATTTAA 1170961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34527059434092