Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_031690.1
Length=11308
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 87.8 1e-13
>seq57646
Length=1202957
Score = 87.8 bits (96), Expect = 1e-13
Identities = 289/441 (66%), Gaps = 14/441 (3%)
Strand=Plus/Plus
Query 4691 ATTTTCTTTATGACGGTAGTCATATCATCTGCCATAGTTAGTCCTTTAAACAATGGAACA 4750
|| || || || || | | | | |||||| |||||||||| ||| ||| | ||||| |
Sbjct 1170942 ATCTTTTTCATAACTGAATTTAAATCATCGGCCATAGTTAACCCTGAAAATAGTGGAATA 1171001
Query 4751 AAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAATACTCTCGTAAAGCCCAGGTCAAT 4810
||||| | || || || | |||||||||||||| || || | | ||| ||||
Sbjct 1171002 TAGTGAATTTTAATAAGATACTCTGTTATTACAAAGTAATCCCTGAGTTGCCATGTCATC 1171061
Query 4811 AGAGCATAAAATCTTCCTCCAATC--TTGATCTCTCGCTCTTTTCCTTTAAGTCCTATGA 4868
|||| | ||||| ||| |||| || || |||| ||||| ||| | || ||||| |
Sbjct 1171062 AGAGAGAAGAATCTACCT--AATCTTTTTATTTCTCTTTCTTTCCCTCTTAGACCTATAA 1171119
Query 4869 TGAGATCCTCAAGAGTTAGTCCATTGTCATTGA-CTTCTTGCAGGAACTTTTTCCACTCC 4927
| || ||| | || |||| ||||| | ||||||| ||||| | ||||| |
Sbjct 1171120 CTAAATGCTCTAACTCTAATCCAAAATCATTTATCTTCTTG-AGGAATTCCTTCCAATTT 1171178
Query 4928 GTTGCAGGTTTTTGGAGAAATGATTCCAGAACTTTATTTGTTGGGATTGG-GTCATGGGA 4986
|| || | |||| || |||| | || || |||| | ||||| || || |||||
Sbjct 1171179 GTGGCTTCTGTTTGAAGGAATGTCTTGAGTACCTTATGAGATGGGACAGGTGTATTGGGA 1171238
Query 4987 ACGTGTCAGA-ATGTGTCTATAGACCT--CAGAGTATTGCATAGAATGGCTCTTGTCACT 5043
| | ||| ||| || || || | ||||| ||| || || || ||
Sbjct 1171239 GACTTTAAGATATGCTCCTTTAATTCTGAAAAAGTAT----AAGAGTGACTTTTATCTGA 1171294
Query 5044 ATAGATAACGGATGGATCAATGACATCGGGAATCTCCATACATTTTTGAAGCGGTAATCT 5103
||| || | ||||| || |||||||| ||||| | ||||| | ||||| |
Sbjct 1171295 ATAAATTAAACTAGGATCTATTACATCGGGTATCTCAAAGCATTTAGATAACGGTAGTTC 1171354
Query 5104 ATGCCAGTTGTCTCCAAAATC 5124
|||||| ||| ||||||||
Sbjct 1171355 ATGCCATCGGTCACCAAAATC 1171375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36046032596192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |