Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_031276.1 Length=7202 Score E Sequences producing significant alignments: (Bits) Value seq7022 535 2e-148 seq4190 125 3e-25 >seq7022 Length=3540 Score = 535 bits (592), Expect = 2e-148 Identities = 994/1449 (69%), Gaps = 42/1449 (3%) Strand=Plus/Plus Query 1562 CAAGCATTTGGTCTTTATCGAATCTGGGGACATCCTACTGTAGAACCATTAGAAGGGACA 1621 ||||| || ||||||||| | ||||| ||||| || | || || || ||||| || Sbjct 1158 CAAGCTTTCGGTCTTTATAAGTTTTGGGGCCATCCCACCCTGGAGCCCTTGGAAGGAACG 1217 Query 1622 TCAGCATTAAAGGAAGTTGCTACTAAAGTTCGTGGATTGA--ATGCAAA-GTATTCCAAT 1678 || || || ||| | || ||| |||| | ||| | | || | ||| ||||| Sbjct 1218 TCTGCCTTGAAGAGCATAGCCACTCGAGTTAG---ATTTACAAACCATACGTACACCAAT 1274 Query 1679 GCAATCACTTACAAATTTAAAGAAGAGTTTATTATGAGGTATATTCGACAAGAGAAAAAA 1738 ||| | || | ||| ||||||| ||||||||||| || ||||| ||| ||||| | | Sbjct 1275 GCAGTAACCAATAAACTTAAAGAGGAGTTTATTATTAGATATATAAAACATGAGAACAGA 1334 Query 1739 TGGCCACCTTTAGATGTTACTCAACTTTCTCCTACAAATCCTGTTAGGGAATCGTATGAA 1798 || | ||||| | ||||| |||| || ||| | | ||| | ||||| Sbjct 1335 -----AC---TGGATGTCTCAAAACTTCTTCCTTGGAACCCTTTACGAGAAGCATATGAT 1386 Query 1799 CATAAA--ACTGATTTTCCGATTCATCATCAGAACTACAAAAGATCTTACTTGAGATTAA 1856 | ||| ||| | ||| | | || || || || | |||| || || | | Sbjct 1387 AAGAAAGGACTA--TATCCCA---AACACCACAAATATTAT-GATCGTAAATGCCTATCA 1440 Query 1857 TTAA---ATTTCTACCAACTTTTCCAG-TTGACCCCAAATTTGATTTAGTTGAAATGATT 1912 ||| | ||| | ||| |||||| | |||| || ||||| |||||| ||||||||||| Sbjct 1441 TTAGTGGAATTCAAGCAAATTTTCCCGGTTGATCCTAAATTCGATTTAATTGAAATGATT 1500 Query 1913 GCTGATAAAGCAATGTCATTATTTACACCAGATCTAATCAATCATTTAATTCAG-GGCAA 1971 |||| ||||| ||||| | | || || || || || || | || || ||| ||||| Sbjct 1501 ACTGACAAAGCTATGTCCCTTATAACTCCTGACCTCATTGATAACTTGAT-CAGAGGCAA 1559 Query 1972 AGGAGTCGGGACATCATTAGACCGATCAGTCTTAGTTCAATGGTTACAATCTGCCTTACA 2031 |||||| || | | ||||| |||| || | ||||||||||| | ||||| Sbjct 1560 AGGAGTGGGCTCTACTATAGACAGATCGGT--------ACTGGTTACAATCGGATTTACA 1611 Query 2032 TGATCCAGTTGAATTCTT-GAAGACAGTGGATTTATATGGCTTTACTCATCTTGAAAAGA 2090 ||||||| || ||||| || || || | ||||||||| | | ||| | Sbjct 1612 TGATCCAAAGGATTTCTTAGATTTCATTG-ACAAATATGGCTTCCCAGAGTCAGAACAAT 1670 Query 2091 CCTTGGGAGTTAAAGAANNNNNNNNNNNNNNNNNAATTGAGGCAAGACTTTTTGGATTAA 2150 | | | || |||||| | | || ||||| | ||||| |||| Sbjct 1671 CAGTTGAGGTCAAAGAAAAAGAACGGGAAGGAAAACTAGAAGCAAGGTTATTTGGTTTAA 1730 Query 2151 TGACACTTATTAAACGTATGTACATAGTCTTAACAGAAGCACTGTTGGCAGA--ATACTT 2208 |||| ||| | ||||| ||||||| ||| |||||||| || |||||||||| ||| || Sbjct 1731 TGACTCTTTTCAAACGGATGTACACAGTTTTAACAGAGGCTTTGTTGGCAGAGCATATTT 1790 Query 2209 AATTAAATATTTTCCGGAAATTACCATGATTGATGATGAATTAAGTTTGGACaaaaaaaG 2268 | ||||| ||||| ||||| |||||||||||||| || || |||||| |||||| | Sbjct 1791 --TGAAATACTTTCCAGAAATCACCATGATTGATGACGAGATATCTTTGGATAAAAAACG 1848 Query 2269 ATTAATGTTTAATGATCCATCTCTATACAACCGGTCTGTATTTACTAGTTTAGATTTCTC 2328 | ||| || ||| | ||| | ||| ||||| | || |||||||||||||| || Sbjct 1849 GATGGAGTTCAACGATTCCTCTTTGAGCAAAAGGTCTTTGTTCACTAGTTTAGATTTTTC 1908 Query 2329 TAAATGGAACTCTAACATGAGAGAAGCAGAAACTCATGGTATTTTTCAAGCATTTGATCA 2388 ||||||||| | |||||||||||| ||||||| | | ||| || ||||||| Sbjct 1909 AAAATGGAACACAAACATGAGAGAAAACGAAACTCGAGACACTTTCAAAATGATTGATCA 1968 Query 2389 ATTGTTCGGATTTACAAATTGTTTTCAACGAACTCATGAGATGTTTAAAGATTCATACAT 2448 |||||| || ||||| |||||||||||||| || ||||| |||||| | |||| ||| Sbjct 1969 ATTGTTTGGGTTTACTAATTGTTTTCAACGCACCCATGAAATGTTTGATACCTCATGCAT 2028 Query 2449 CTATTTATTAAACGGATCATATTTGCCAACTTATCGAGGAGGACATTTTATTTCCGATTT 2508 ||| | |||| || || |||||||| ||||| | | ||| | |||| | || || Sbjct 2029 TTATCTGCTAAATGGGTCGTATTTGCCCACTTACCATAGTGGAGAATTTAAACCTGACTT 2088 Query 2509 AGGATCATGGTATGGTCATTTAGGGGGCATCGAGGGACTACGCCAAAAAGGATGGACACT 2568 |||| |||| | || ||| |||| || || || || || | |||||| | ||||| | Sbjct 2089 AGGACTATGGAAAGGACATCTAGGAGGTATTGAAGGTTTAAGACAAAAAAGCTGGACCAT 2148 Query 2569 GTGGACAATTTCGTTAATTCTACTTGCTGCAGAAAATTACCCCATTAGGCTCAAATTAAT 2628 ||||| | | | ||| | | ||| ||||| |||| | | | | | | | || Sbjct 2149 ATGGACTGTGGCACTCATTTTGTTAGCTTCAGAAGATTATCTTACAACGATTAGGCTGAT 2208 Query 2629 GGGACAAGGAGATAACCAAATATTAAGAGAAATCTTTCCGCAGGAATTAACCCCTGATAG 2688 |||||||||||||||||| || || ||||||| | ||| | ||||||| | | | Sbjct 2209 GGGACAAGGAGATAACCAGGTAATACGAGAAATTTATCCTCCAGAATTAAAGAAAGCTCG 2268 Query 2689 ACAATTAGAATTACACTTTCAATTTCTTCAACAACTAAATTTGATACTTGAACATATTGG 2748 ||||| || | || ||||||| | || ||||| ||||| | || | || Sbjct 2269 TCAATTGGATATTCATCGTCAATTTATATTGAAATTAAATGATATACTCTCATATGTGGG 2328 Query 2749 ACCTCCCTTAAAGATGGAAGAAACTTGGACCTCACGAGAGTTTTTTGTATATGGAAAATA 2808 ||||| ||||| ||||||||||| |||||||| | || || |||||||| |||||||| Sbjct 2329 CCCTCCTTTAAAAATGGAAGAAACGTGGACCTCTAGGGACTTCTTTGTATACGGAAAATA 2388 Query 2809 TTTAATGTATAAAGGAGCTGCTTTACCTATGTACGCTAAACGCATTTGTAGAATGTTTCG 2868 | | || | ||||||||| | || || ||||| | ||| | ||||| |||||||| | Sbjct 2389 TCTGATCTGGAAAGGAGCTCCATTCCCCATGTATGGAAAAAGAATTTGCCGAATGTTTAG 2448 Query 2869 ACTGTCTAATGAGGATTATCCGACTTTAGAATCCACAATTTCGTCATTAACTGCTAATTT 2928 | |||| || ||||| | ||| ||||||||| | ||||| |||||| |||| || ||||| Sbjct 2449 AATGTCAAACGAGGACTTTCCAACTTTAGAACCAACAATATCGTCACTAACAGCAAATTT 2508 Query 2929 GTCCTCTGCTCTATCTTACAGTACAGATCCCGGATACTTACTTTACATCTATTATACAGA 2988 ||| || || | |||| ||| || || || |||||| | | | | ||||| ||| Sbjct 2509 GTCATCCGCGACAGCTTATAGTTTTGACCCTGGTTACTTATTGTTCCTGTATTACCTAGA 2568 Query 2989 GTTAATTGG 2997 ||||||||| Sbjct 2569 GTTAATTGG 2577 >seq4190 Length=519 Score = 125 bits (138), Expect = 3e-25 Identities = 244/359 (68%), Gaps = 16/359 (4%) Strand=Plus/Plus Query 4008 CTTACCGAGGTTCCACCACAAAACAGAAAGTTTCTGGTTTTGGAGAAAAACTATCAATAA 4067 |||| ||||| || || |||||||| || ||||||||||||| || | | || Sbjct 173 CTTATCGAGGGTCAGTTACTAAACAGAAGGTCACTGGTTTTGGAGACAAGATTGCTATTC 232 Query 4068 TCTCTGAACCATTGTTACAGAAAGTAATTAAGTCATTTAATTTAATAGGTTGGGGAATAG 4127 |||| || ||| |||| ||||| | | |||||| | |||| |||||||| || | Sbjct 233 AAGCTGATCCCTTGCTACAAAAAGTCCTAAGAGCATTTAGTCTAATTGGTTGGGGCATTG 292 Query 4128 CTTCTCAAGGTAATTTAAGCTCATTATTACATCAACTATTAGAGGCTAGAACGGACCTGG 4187 | || | || ||| || || ||| || || ||| | ||| ||| || || Sbjct 293 CCCCTGATGGAAATCTATCCTTATTGTTGCAACAAATGTTAT----TAG------CCCGG 342 Query 4188 ATCCCAAATG----GTTAATTCCTGATGAATCACAACTTGCAGGATCAGTCCACCACCGC 4243 |||||| | |||||| | |||||| | || | |||||| | || || | Sbjct 343 ATCCCACCTTCACTGTTAATCCTGGATGAAGCGAAATTAACAGGATA--TACATCATAGA 400 Query 4244 CTTCAGGATGATAGAACAGGTCATGGAGGATCTGTATCACTATTGCCCAATTATGCCTCC 4303 ||||| |||| || || || || || |||||||| | | |||||||||| || | Sbjct 401 ATTCAGAATGAAAGGACTGGACACGGTGGATCTGTCCCCATTTTGCCCAATTTTGGAACA 460 Query 4304 AAATTCACATTTGACACTTTTCCTCTTTATGAATATAGTAAAGGCTCAAAAAATGTCAA 4362 | |||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || Sbjct 461 AGATTCACTTTTGATACTTTTCCTCTGGTAGAATATAGCAAAGGGTCCAAAAATGTAAA 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22928416180984