Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq40 122 6e-24 seq18 109 4e-20 >seq40 Length=949583 Score = 122 bits (134), Expect = 6e-24 Identities = 240/354 (68%), Gaps = 1/354 (0%) Strand=Plus/Plus Query 6343 AGGTAGATTTTTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATA 6402 ||| ||||| || || |||||| |||| | | |||| || ||||||||||| || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6403 TTTGATAAAGACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAAC 6462 ||| || || |||| || || | || ||||| | |||||||| || ||| |||| Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6463 TGCAGTCATTAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGC 6522 | | | || || || | ||| | ||||| || ||||| || || | | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 6523 AATTTGCATAGCCAATCACATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATC 6582 || | ||||| ||| | || ||||| |||||||||||| ||| |||| || | | Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAA-GAGGAGAGG 1896 Query 6583 AAACGGCCCAGTGTTCCGAGTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAG 6642 |||| || | || ||| |||||| | || ||||| | ||| |||||||| || Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 6643 AACTCATGAATTTTTTGAGAAAAGTCTTATATACTACAATGGAAGACCAGACTT 6696 ||| |||||||| ||| | |||| | | | || || ||| |||||| ||||| Sbjct 1957 AACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTT 2010 >seq18 Length=5623067 Score = 109 bits (120), Expect = 4e-20 Identities = 237/349 (68%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 6350 TTTTTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATA 6409 || ||||| || ||| |||| | |||| || ||||| || |||||||| ||||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6410 AAGACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTC 6469 || || || || || | || || || | || ||||| || || ||||| || || Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6470 ATTAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCATATGAG-GCAATTTG 6528 || || ||| | |||||| | || || || |||| |||| | ||| | | |||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6529 CATAGCCAATCACATTGATTACGAAAAATGGAATAACCACCAA--AGGAAGTTATCAAAC 6586 ||||| ||||| || ||||| |||||||||||| |||||| ||||| | || Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAA--CAGGGAAT 2777151 Query 6587 GGCCCAGTGTTCCGA-GTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAAC 6645 | ||| |||| | | || ||||| || || |||||| || || ||| ||||| Sbjct 2777150 GATCCA-TGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAAC 2777092 Query 6646 TCATGAATTTTTTGAGAAAAGTCTTATATACTACAATGGAAGACCAGAC 6694 | ||||||||||| |||| | | | || || ||| | |||||||| Sbjct 2777091 TAATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGAC 2777043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35599015971500