Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq40 123 2e-24 seq18 87.8 1e-13 >seq40 Length=949583 Score = 123 bits (136), Expect = 2e-24 Identities = 236/343 (69%), Gaps = 11/343 (3%) Strand=Plus/Plus Query 6264 GGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTAT 6323 || |||||||| ||||| ||| |||| | | || ||||| ||||||||||| |||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6324 CTGATCAAGACACATTATGTTCCGCTCTTC-AAGGGATTAACGATGGCCGACGATCTAAC 6382 | || || |||||||||||| || ||| |||||||| || ||||| || ||| |||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATT-ACAATGGCAGATGATTTAAC 1777 Query 6383 CTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGACGACTAC----T 6438 || || |||||| || | |||| | || ||||| ||| |||||| | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 6439 CATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCAACGGAAAG 6498 ||||| | || || || | || ||||||||||||||||| |||||| | || Sbjct 1838 CATCTCT----ATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG 1893 Query 6499 AATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCTTAGGATACCCTCGACTGTTTG 6558 | || | ||| | ||| ||| ||||| |||| ||||||| || | | | Sbjct 1894 -AGGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCG 1952 Query 6559 AAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATTATAA 6601 ||| || |||||||||||| | || | | | |||||||| Sbjct 1953 TAAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAA 1995 >seq18 Length=5623067 Score = 87.8 bits (96), Expect = 1e-13 Identities = 196/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 6257 GATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTAC 6316 ||| | | || | ||||||||||| ||| ||| | || ||||| ||||| || || Sbjct 2777401 GATGGGGTGGGGGTTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAAC 2777342 Query 6317 AGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAAGGGATTAACGATGGCCGACGA 6376 || || ||||| || || | ||| || | ||||||||| | || ||||| || || Sbjct 2777341 CGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGA 2777282 Query 6377 TCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGAC-GACT 6435 |||| | | |||||||| | |||||| ||| ||| | |||| ||| || | Sbjct 2777281 CTTAACTACACTCATAAAGAAGCTTTTAGAT-ACATCCTCGGGACAAGCTTTGACGGATT 2777223 Query 6436 A-CTCATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCAACGG 6494 | | | ||| | || || || || || ||||||||||||||||| ||| ||||| Sbjct 2777222 ATCGGAGTTATTTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGA 2777163 Query 6495 AAAGAATCCAATGGGCCTGTATTTCGA-GTCATGGGTCAATTCTTAGG 6541 | | |||| || | |||| | |||||||||||||| ||||| Sbjct 2777162 GGAACAGGGAATGATCC-ATGTTTCAAGGTCATGGGTCAATTTTTAGG 2777116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35144628531684