Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq40 179 3e-41 seq18 131 1e-26 >seq40 Length=949583 Score = 179 bits (198), Expect = 3e-41 Identities = 378/547 (69%), Gaps = 20/547 (4%) Strand=Plus/Plus Query 8440 GGAAGATTCTTCTCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTAC 8499 ||||||||||| ||| ||||| ||| ||| |||||||||||||| |||| ||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 8500 CTTATTAAGGAATATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAA 8559 | ||||| || ||| |||||| || ||| | || | || ||||| |||||| || | Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 8560 TCTGTTATAAAGAAGATGTTAGAAAATTCTCAAGGCCAAGGATCT-AATGATTATGAGTA 8618 || | | |||||| || | || | ||| ||| ||||| ||| ||| || | | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGG-TCTGGCTGACTACGGGAT 1837 Query 8619 TGTTTCAATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATC 8678 | || ||||| ||| |||| |||||||||||||||||| || ||||| || | Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-AGG 1896 Query 8679 AAATTATTATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACG 8738 || || | |||| ||||| |||||| | | ||| || | ||||||||| | | | Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 8739 AACACATGAATTCTTTGAACAAAGTTTGATT-TATTATCCTCAAAGAGCTGA--TTTGAT 8795 ||| |||||||||||| || ||| || ||| |||||| ||||||| |||| ||| || Sbjct 1957 AACGCATGAATTCTTT-AATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAAT 2015 Query 8796 GCACGTT-GAA---GGCGATACACT-AACAAACTCGTCCGCATCACTGGTGTGTTGGAAT 8850 | ||| ||| | ||| | | || | || | |||| | || || |||||| Sbjct 2016 GATTGTTCGAAATGGTCGA---ATTGAAAATTCTACACGGCAT--ATCGTATGCTGGAAT 2070 Query 8851 GGACA-AAAAGGGGGTTTAGAAGGATTAAGACAAAAAGGATGGTCAGTATTAAATTATTT 8909 || || |||||| |||||| | || ||| |||||||| || | ||| || Sbjct 2071 GGTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATT 2130 Query 8910 AGTTATAGAAAGGGAATCT-AGGATAAGAAACACAAAGGTTAAAGTATTAGCACAAGGGG 8968 | |||||||||||| | | ||| || ||||| || || | | || |||||||||| Sbjct 2131 GGCAATAGAAAGGGAAAGTCAAGATCAG-AACACCAAAGTAAGCCTTTTGGCACAAGGGG 2189 Query 8969 ATAATCA 8975 |||| || Sbjct 2190 ATAACCA 2196 >seq18 Length=5623067 Score = 131 bits (144), Expect = 1e-26 Identities = 379/564 (67%), Gaps = 37/564 (7%) Strand=Plus/Minus Query 8446 TTCTTCTCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATT 8505 ||||||||| | ||| ||| || |||||||||||||| | || || ||||| || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 8506 AAGGAATATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGAT----CTACAATC 8561 || | ||||| || ||||| | ||| | || ||||| ||||| ||||| || Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 8562 TGTTATAAAGAAGATGTTAGAAA-ATTCTCAAGGCCAAGGATCTAATGATTAT--GAGTA 8618 ||||||||| | ||||| | || ||| || |||| | | |||||| |||| Sbjct 2777268 ----ATAAAGAAGCTTTTAGATACATCCTCG-GGACAAGCTTTGACGGATTATCGGAGT- 2777215 Query 8619 TGTTTCAATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCAA--AGGAAAGAA 8676 | |||| ||||| |||||||| |||||||||||||||||| ||||||| ||||| | Sbjct 2777214 TATTTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAA--CA 2777157 Query 8677 TCAAATTAT-TATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTAC 8735 ||| || ||| |||||| || ||||| || | ||| ||||| || |||| | ||| Sbjct 2777156 GGGAATGATCCATG-TTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCA-ATAC 2777099 Query 8736 AC-GAACACATGAATTCTTTGAACAAAGTTTGATTTATTATCCTCAA-----AGAGCTGA 8789 | |||| ||||||| ||| ||| | |||||||| |||| ||| | || Sbjct 2777098 TCAGAACTAATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGACCCGA 2777039 Query 8790 TTTGATGCACGTTGAAGGCGATACACTAACAAACTCGTCCGCATCACTG-GTGTGTTGGA 8848 | |||| | | || | | || ||| | | | | |||| | || ||||||| Sbjct 2777038 TATGATTATGAATAATGGTGTCA---TAGAAAATTTGACAG-ATCAGAGAGTATGTTGGA 2776983 Query 8849 ATGGACAAAAAGGGGGTTTAGAAGGATTAAGACAAAAAGGATGGTCAGTATTAAATTATT 8908 |||||||| || || ||| ||| | ||||| ||| || | || | ||| | Sbjct 2776982 ATGGACAATTGGGAGGGCAAGAGGGAATCGGACAACGAGGTTGTTGTGTCGTGAATGCTC 2776923 Query 8909 TAGTTATAGAAAGGGAATCT-AGGATAAGAAACACAAAGGT----TAAAGTATTAGCACA 8963 ||| |||||| | |||| | |||| | ||||| ||||| | | || | || || Sbjct 2776922 TAGCAATAGAACGTGAATGTCAGGACCA-AAACATCAAGGTGAGCTTACTTACTTGCTCA 2776864 Query 8964 AGGGGATAATCAAACAATCAGTAC 8987 ||| ||||||||| ||| |||| Sbjct 2776863 AGGAGATAATCAAGTTATCTGTAC 2776840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42107603728469