Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013
-12-04] 2,457 sequences; 277,059,195 total letters
Query= NC_013955.1
Length=15764
Score E
Sequences producing significant alignments: (Bits) Value
seq40 132 5e-27
>seq40
Length=949583
Score = 132 bits (146), Expect = 5e-27
Identities = 367/553 (66%), Gaps = 20/553 (4%)
Strand=Plus/Plus
Query 11032 GGAAGGtttttttCTTTAATGACATGGGAACTCAGAGAATATTTCGTATGTACAGAGTAT 11091
||||| || |||||| |||||| ||| ||| ||||| ||||| ||| ||| ||||||
Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718
Query 11092 ATGATCAAACAGTTCTTCATTCCCCTGTTTCAAGGCCTGACTATGGCTGATGATATGCAA 11151
| || ||| | | ||||||| || |||| | || ||||| |||||| | ||
Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTT--AA 1776
Query 11152 GAGGTCCTT----AAAAAATTACTAAGCAGTTCTAGTGGTCAAGGTTTAGACAATTACAA 11207
| | || || ||||| || | ||| ||||||||| | | | |||
Sbjct 1777 CAACT--TTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGG 1834
Query 11208 CTTGATCTCAATTGCCAATCATTTTGATTATGAAAAATGGAATAATCATCAAAGATATGC 11267
| ||||| || || ||| || | |||||||||||||||||| ||||||||| |
Sbjct 1835 GATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGA 1894
Query 11268 TTCAAATTGCCATGTGTTTAAAGTCATGGGACAATGTTTTGGTTTACCCAATCTGTTCCT 11327
|| || | | |||||||| ||||| ||| ||| || || || || | || |
Sbjct 1895 GGGAACGATCC-TTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953
Query 11328 GCGTACACATGAATTCTTTGAGAAAAGCTTGATCTATTATGCCAATAGACCAGA--TTTG 11385
| || |||||||||||| | |||| | |||||||| | ||||| || |||
Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTA 2013
Query 11386 ATGATGGTTCAAGGAGATTCTCTCATT---AATAGAACAGAGCATATGGTATGCTGGGAA 11442
||||| |||| || || || ||| ||| ||| |||||| ||||||||| |
Sbjct 2014 ATGATTGTTC---GAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAAT 2070
Query 11443 GGTCA-AAAAGGAGGATTAGAAGGCCTTAGACAAAAGGGATGGTCCGGACTTAATTTATT 11501
||||| ||| || |||||| |||| ||| ||||||| || | ||| |||
Sbjct 2071 GGTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATT 2130
Query 11502 GGTGATTGAGCGTG-AAGCAAAAATCCGGAACACAAAGCTCAAAATTTTGGCACAAGGAG 11560
|| || || | | ||| || || | |||||| || | | ||||||||||||| |
Sbjct 2131 GGCAATAGAAAGGGAAAGTCAAGAT-CAGAACACCAAAGTAAGCCTTTTGGCACAAGGGG 2189
Query 11561 ACAATCAAGTTAT 11573
| || || |||||
Sbjct 2190 ATAACCAGGTTAT 2202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 50324970274157
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |