Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_013955.1 Length=15764 Score E Sequences producing significant alignments: (Bits) Value seq40 132 5e-27 >seq40 Length=949583 Score = 132 bits (146), Expect = 5e-27 Identities = 367/553 (66%), Gaps = 20/553 (4%) Strand=Plus/Plus Query 11032 GGAAGGtttttttCTTTAATGACATGGGAACTCAGAGAATATTTCGTATGTACAGAGTAT 11091 ||||| || |||||| |||||| ||| ||| ||||| ||||| ||| ||| |||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 11092 ATGATCAAACAGTTCTTCATTCCCCTGTTTCAAGGCCTGACTATGGCTGATGATATGCAA 11151 | || ||| | | ||||||| || |||| | || ||||| |||||| | || Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTT--AA 1776 Query 11152 GAGGTCCTT----AAAAAATTACTAAGCAGTTCTAGTGGTCAAGGTTTAGACAATTACAA 11207 | | || || ||||| || | ||| ||||||||| | | | ||| Sbjct 1777 CAACT--TTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGG 1834 Query 11208 CTTGATCTCAATTGCCAATCATTTTGATTATGAAAAATGGAATAATCATCAAAGATATGC 11267 | ||||| || || ||| || | |||||||||||||||||| ||||||||| | Sbjct 1835 GATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGA 1894 Query 11268 TTCAAATTGCCATGTGTTTAAAGTCATGGGACAATGTTTTGGTTTACCCAATCTGTTCCT 11327 || || | | |||||||| ||||| ||| ||| || || || || | || | Sbjct 1895 GGGAACGATCC-TTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953 Query 11328 GCGTACACATGAATTCTTTGAGAAAAGCTTGATCTATTATGCCAATAGACCAGA--TTTG 11385 | || |||||||||||| | |||| | |||||||| | ||||| || ||| Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTA 2013 Query 11386 ATGATGGTTCAAGGAGATTCTCTCATT---AATAGAACAGAGCATATGGTATGCTGGGAA 11442 ||||| |||| || || || ||| ||| ||| |||||| ||||||||| | Sbjct 2014 ATGATTGTTC---GAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAAT 2070 Query 11443 GGTCA-AAAAGGAGGATTAGAAGGCCTTAGACAAAAGGGATGGTCCGGACTTAATTTATT 11501 ||||| ||| || |||||| |||| ||| ||||||| || | ||| ||| Sbjct 2071 GGTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATT 2130 Query 11502 GGTGATTGAGCGTG-AAGCAAAAATCCGGAACACAAAGCTCAAAATTTTGGCACAAGGAG 11560 || || || | | ||| || || | |||||| || | | ||||||||||||| | Sbjct 2131 GGCAATAGAAAGGGAAAGTCAAGAT-CAGAACACCAAAGTAAGCCTTTTGGCACAAGGGG 2189 Query 11561 ACAATCAAGTTAT 11573 | || || ||||| Sbjct 2190 ATAACCAGGTTAT 2202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50324970274157