Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq18 123 2e-24 >seq18 Length=5623067 Score = 123 bits (136), Expect = 2e-24 Identities = 217/311 (70%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 9916 AGAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAA 9975 ||||| |||||||| ||||| || || ||||||||| ||| ||| ||||||||||| Sbjct 2777361 AGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAG 2777302 Query 9976 GGATTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAA 10035 ||| | || ||||| |||||| || ||| | | || || | ||| | ||| Sbjct 2777301 GGAATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGATACATCCTCG 2777242 Query 10036 GGACAGGGCCTGATTGATTA-CAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAA 10094 ||||| | ||| ||||| | || ||| | || ||||||||| | |||||||| || Sbjct 2777241 GGACAAGCTTTGACGGATTATCGGAGTTATTTCTATAGCTAATCATATAGATTATGAAAA 2777182 Query 10095 GTGGAA---TAACTATCAAAGAAAAGAGTCCAATG-GCCCTGTGTTCCGAGTCATGGGTC 10150 ||||| | || | | | ||| || | |||| || ||| ||| |||||||||| Sbjct 2777181 ATGGAATGCTCACCAACGAGGAACAGGG---AATGATCCATGT-TTCAAGGTCATGGGTC 2777126 Query 10151 AATTTTTGGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTTGAAAAAAGTCTTA 10210 ||||||| || | || || | |||| |||||| |||| |||||| |||| | | Sbjct 2777125 AATTTTTAGGTCTGCCCAACTCAATACTCAGAACTAATGAATTTTTTAGTAAAATTACTT 2777066 Query 10211 TTTATTACAAT 10221 ||||||| ||| Sbjct 2777065 TTTATTATAAT 2777055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46974665455880