Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq40 185 9e-43 seq18 114 1e-21 >seq40 Length=949583 Score = 185 bits (204), Expect = 9e-43 Identities = 271/379 (72%), Gaps = 12/379 (3%) Strand=Plus/Plus Query 11058 AGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTA 11117 ||| ||||||||||| | ||||||||| ||||||||||||||||| | || ||||| Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 11118 TTTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACA 11177 ||| |||||| |||||| ||| || | |||||||| | || |||||||||||| || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 11178 AACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGT---ACTGAAACCTATGA 11234 |||| | | || || || | ||| ||| |||| |||||| |||| ||| | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGA---CTACGG 1834 Query 11235 AAACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGA 11294 | ||| | ||||| ||| |||| || ||||| || |||||| |||||||| || Sbjct 1835 GATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGA 1894 Query 11295 TTCAAATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGC 11354 || | | | |||| | || ||||| |||||||||| | ||||| ||||| | Sbjct 1895 GGGAACGA-TCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953 Query 11355 AAGAACTCATGAGTTTTTTGAGAAAAGCCTGATCTACTATAATCAGAGACCAGA--TCTG 11412 |||||| ||||| || ||| | |||| | |||| |||||||| ||||| || | | Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTA 2013 Query 11413 ATGAGAGTTGTTGGAAATG 11431 |||| ||||| |||||| Sbjct 2014 ATGA---TTGTTCGAAATG 2029 >seq18 Length=5623067 Score = 114 bits (126), Expect = 1e-21 Identities = 242/357 (68%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 11065 TTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTATTTGATT 11124 ||||| || | ||||| ||| | |||||||||||||||| | || || || |||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 11125 AAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACAAACTGTA 11184 ||| || ||||||||||||||||| ||| | || ||||||||||| || || | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 11185 ATTAAAAAGATGATTGATGTATCAGCAGGACAAGGT---ACTGAAACCTAT-GAAAACAT 11240 || || ||| | | ||| ||| | ||||||| | || || ||| | | || Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGA---TTATCGGAGTTAT 2777212 Query 11241 AACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATTCA-- 11298 | ||||| ||| |||| || ||||| || |||||| | | ||| || | || Sbjct 2777211 TTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGA---GGAACAGG 2777155 Query 11299 -AATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAG 11357 ||| | || ||||| |||||||| ||||||||||| || || | |||| || Sbjct 2777154 GAATGATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAG 2777095 Query 11358 AACTCATGAGTTTTTTGAGAAAAGCCTGATCTACTATAATCAGAGACCAGATCTGAT 11414 |||| |||| |||||| |||| | || |||||||| ||||||| | ||| Sbjct 2777094 AACTAATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGACCCGAT 2777038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50654560910530