Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq40 113 3e-21 seq18 84.2 2e-12 >seq40 Length=949583 Score = 113 bits (124), Expect = 3e-21 Identities = 245/357 (69%), Gaps = 11/357 (3%) Strand=Plus/Plus Query 6681 AGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATA 6740 |||| | ||||| ||||| ||| ||| | | ||||| ||||||||||| || || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6741 CTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGAC 6800 ||||| || ||| ||||| ||| | ||||||||| | || |||||||||||| | || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6801 GGAAGTTG-TAAAGAAAATGCTAGAAAGGAGTCA--AGGGCAGGGAGAAGATGACTACGA 6857 | ||| ||||||| |||| || | ||| ||| || || | |||||||| Sbjct 1778 -AACTTTGACAAAGAAATTGCTGGATA--CTTCATCAGGTCAAGGTCTGGCTGACTACGG 1834 Query 6858 GCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGA 6917 | |||| || || || | || || ||||| || |||||| ||||| || |||| Sbjct 1835 GATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGA 1892 Query 6918 -ATCAAATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATCG 6976 | || | ||| | || | ||| ||||| |||| |||||| || | || |||| Sbjct 1893 GAGGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCG 1952 Query 6977 AAAAAACTCATGACTTTTTTCAAGACAGCTTGATT-TATTACAATGGGAGACCAGAC 7032 || ||| ||||| || ||| || | | | ||| ||||| ||| ||||| ||| Sbjct 1953 TAAGAACGCATGAATTCTTT-AATAAAATTATATTCTATTATAATCAAAGACCTGAC 2008 >seq18 Length=5623067 Score = 84.2 bits (92), Expect = 2e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 6686 GGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAA 6745 ||||||||||||| ||| ||| | ||||| |||||||| ||||| |||||| | | Sbjct 2777390 GGTTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGA 2777331 Query 6746 TCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGA 6794 | || |||| |||||| |||||||| || | |||||||||||||| Sbjct 2777330 TAAAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGA 2777282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36642187136148