Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq40 147 2e-31 seq18 120 2e-23 >seq40 Length=949583 Score = 147 bits (162), Expect = 2e-31 Identities = 368/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 6343 AGGTAGATTTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTA 6402 ||| ||||| || || | ||| |||| || || || || ||||| | || ||||| Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6403 TTTGATCAAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGAC 6462 ||| || || || | ||| || | ||| | ||| | || ||||| |||||| | || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6463 AGCAGTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAG 6522 | | ||| || || ||||||| | || || |||||||| || | |||||| | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 6523 CGTTTGTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTC 6582 | | | ||| || ||| |||| || ||||||||||||||| |||||| || | | Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG-G 1896 Query 6583 CAATGGACCTGTGTTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCG 6642 || | ||| | |||||||| ||||| |||| || || | ||||| || || | Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 6643 GACACATGAGTTTTTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGA--TCTCATG 6700 || ||||| || ||| | |||| | || | || |||||| ||||||| || | | ||| Sbjct 1957 AACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAATG 2016 Query 6701 AAAGTCAGAAATGGGATCTTAGAAAATAGCACACATCAGAGGGTTTGCTGGAATGGACAG 6760 | || ||||||| | |||||| |||| || | || ||||||||||| ||| Sbjct 2017 ATTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATGGTCAG 2076 Query 6761 -GCAGGTGGTTTAGAAGGTTTGAGACAGAAAGGATGGAGTATTCTTAATTTGCTGGTCAT 6819 | ||| || |||||| | || || ||||||| | | | ||| ||| || Sbjct 2077 TGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGCAAT 2136 Query 6820 ACAGAGAG-AAGCGAAAATCCGGAATACCGCAGTTAAAGTGCTAGCACAAGGCGACAATC 6878 | | || | ||| || || | ||| ||| ||| | | | |||||||| || || | Sbjct 2137 AGAAAGGGAAAGTCAAGAT-CAGAACACCAAAGTAAGCCTTTTGGCACAAGGGGATAACC 2195 Query 6879 AAGTCATATGTAC 6891 | || |||||||| Sbjct 2196 AGGTTATATGTAC 2208 >seq18 Length=5623067 Score = 120 bits (132), Expect = 2e-23 Identities = 278/414 (67%), Gaps = 5/414 (1%) Strand=Plus/Minus Query 6350 TTTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATC 6409 || ||||| | ||| |||| ||| || || || ||||| | || || || |||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6410 AAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTG 6469 || |||||||||||||| ||| | || | |||||||| ||||| | || || | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6470 ATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAGCG-TTTG 6528 || || ||| | | || | || || || |||| | || | || || ||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6529 TATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGG 6588 ||| || |||||||| || ||||||||||||||| ||| |||||| | |||| Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATGA 2777149 Query 6589 ACC-TGTGTTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACAC 6647 || ||| || || |||||||| ||||| || ||| || || | ||| | | || Sbjct 2777148 TCCATGT-TTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAACTA 2777090 Query 6648 ATGAGTTTTTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGATC--TCATGAAAGT 6705 |||| |||||| |||| | |||| |||||| || |||| || | |||| | Sbjct 2777089 ATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGACCCGATATGATTAT 2777030 Query 6706 CAGAAATGGGATCTTAGAAAATAGCACACATCAGAGGGTTTGCTGGAATGGACA 6759 | ||||| || |||||||| ||| ||||||| || || ||||||||||| Sbjct 2777029 GAATAATGGTGTCATAGAAAATTTGACAGATCAGAGAGTATGTTGGAATGGACA 2776976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35467819598032