Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq40 178 9e-41 seq18 118 7e-23 >seq40 Length=949583 Score = 178 bits (196), Expect = 9e-41 Identities = 384/560 (69%), Gaps = 22/560 (4%) Strand=Plus/Plus Query 6304 GGGAGATTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATAT 6363 || ||||| || || |||||| ||| || ||||| |||||||| || ||||| ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6364 CTAATTAAGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACG 6423 ||||||| ||| | ||| || |||||| | || | |||||||||||||| | || Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6424 GCTGTAATAAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCA 6483 || | | ||||||| || |||| | |||| || || ||||| || || ||| | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTA--CGGGA 1836 Query 6484 --GTATGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATC--AGAGGAAACG 6539 | | || || || | || || ||||| |||||||| ||||| |||||| | | Sbjct 1837 TCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGG 1896 Query 6540 GTCAAATGAACCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATC 6599 | || || || |||||||||| ||||| ||| | || || || |||| |||| ||| Sbjct 1897 G---AACGATCCTTTTTTTAAAGTGATGGG-CAAATTTTTAGGATTGCCAAACTTA-ATC 1951 Query 6600 G--AGGACTCATGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGA--TT 6655 | || || |||||||||||| | |||| | | ||||||||||| ||| ||||| || Sbjct 1952 GTAAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTT 2011 Query 6656 TGATGAAGGTGCAAGATGGAAGACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAG 6715 | |||| || | | |||| || ||| || | || ||| | || || ||| | | Sbjct 2012 TAATGATTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATG 2071 Query 6716 GACAG-GCAGGCGGATTAGAGGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTG 6774 | ||| | ||| || ||| ||| | || || |||||| || | | || |||| Sbjct 2072 GTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTG 2131 Query 6775 GTTATTCAAAGGG-AATCCAAGATTCGGAACACAGCAGTTAAAGTCCTT--GCACAAGGT 6831 | || |||||| || ||||| || |||||| ||| ||| | || |||||||| Sbjct 2132 GCAATAGAAAGGGAAAGTCAAGA-TCAGAACACCAAAGT--AAGCCTTTTGGCACAAGGG 2188 Query 6832 GATAATCAAGTAATATGCAC 6851 ||||| || || ||||| || Sbjct 2189 GATAACCAGGTTATATGTAC 2208 >seq18 Length=5623067 Score = 118 bits (130), Expect = 7e-23 Identities = 231/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 6310 TTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATT 6369 || ||||| || ||| |||| ||| ||||| ||||||||||| || ||||| || || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6370 AAGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTA 6429 || |||||||| ||| | ||| | || | || |||||||||||| | || | | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6430 ATAAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTA--T 6487 |||||||| | || || | || ||||| | | | | ||||| |||| || | Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTA-TCGGAGTTATTT 2777210 Query 6488 GCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCA--GAGGAAACGGTCAAA 6545 || || || || || || ||||| |||||||| || || |||||| || || Sbjct 2777209 CTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGG--GAA 2777152 Query 6546 TGAACCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGAC 6605 ||| ||| ||| || |||||||||||||| || || | |||||| ||| || || Sbjct 2777151 TGATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAAC 2777092 Query 6606 TCATGAATTCTTTGAGAAAAGTCTCATCTATTATAAT 6642 | ||||||| ||| |||| | | ||||||||| Sbjct 2777091 TAATGAATTTTTTAGTAAAATTACTTTTTATTATAAT 2777055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35365422428496